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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAAAGGCTATTGAAGGAAATGTGTGCTGATGAAGATGGAGATCTAATGATAGATTCTGCTGTGAAAAATGTGCCCAAAGTTTTTGTTGTATCAACTTTGgtgagcatgatgcctgcacaaccattcgtatttcgcaattatcaggtttgaagctaatactgtttattggtgtttgtaaataatggctattaaattacacttattcatggttgttaatgtattgtttctttataatatttaattctctgtccctctttgtcgttactatctataatgcag

Basic information

species Glycine max
transcript GLYMA17G01850.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G01850.1 (Glycine max), 5'ss of exon 10
lower sequence: AT1G61850.2 (Arabidopsis thaliana), 5'ss of exon 10
CGAAAGGCTATTGAAGGAAATGTGTGCTGATGAAGATGGAGATCTAATGATAGATTCTGCTGTGAAAAATGTGCCCAAAGTTTTTGTTGTATCAACTTTGgtgagcatgatgcctgcacaaccattcgtatttcgcaattatcaggtttgaagctaatactgtttattggtgtttgtaaataatggctattaaattacacttattcatggttgttaatgtattgtttctttataatatttaattctctgtccctctttgtcgttactatctataatgcag
                                             | | ||||| || |||||||| ||||| || ||||| ||||||||||| ||| | || ||  |||||||||| ||||||||  ||||||| || || |||||   |  ||  |     || ||  | || || |||  |   |  |   |||      |     ||| |||     ||   | | | |     ||  |  | |||   || |  ||  |  | |||||  |||||
---------------------------------------------ACTAATAGAATCAGCTGTGAAGAATGTTCCAAAAGTATTTGTTGTATCTACTCTTGTTAGTGTGATGCCTGCGCAACCATTTATATTTCGGAACTACCAGgtacaacacttct----ctttttacttttggttaattctttattctctgttaattgcgtatgaagtttttaccactttaaatttgtctgtctattcttcttgtgtgtatcatgttctctcttttctatt-tgcag

upper sequence: GLYMA17G01850.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv10s0116g00830.t01 (Vitis vinifera), 5'ss of exon 10
CGAAAGGCTATTGAAGGAAATGTGTGCTGATGAAGATGGAGATCTAATGATAGATTCTGCTGTGAAAAATGTGCCCAAAGTTTTTGTTGTATCAACTTTGgtgagcatgatgcctgcacaaccattcgtatttcgcaattatcaggtttgaagctaatactg--tttattggtgtttgtaaataatggc-tatta--aattacacttattcat--ggttgttaatgtattgtttctttataatatttaattctctgtccctctttgtcg-ttactatctataatgcag-----
                                               | ||||| || || ||||||||  | || || |||||||| ||||||||| |||||||| | || || || || |||||| | || ||||||||||||||||||  | |||| |   ||| ||| |      | | | | || |||||  | ||  | || ||  |  |  |||| |   ||| ||   || |  | |||   ||  |     ||||||  | ||  | | | |     |      
---------------------------------------------GTTAATAGAGTCAGCAGTGAAAAACATTCCAAAGGTTTTTGTAGTATCAACTCTGGTGAGCGTTATTCCAGCTCAGCCATTCTTGTTCCGCAATTATCAGgtttgacaccaatatttcttttgttgatcaacagagacattagcatattattatttgaatttcttgttcagcatgttgaataattcttgaattgttgtgtttg--tcgttaattttctttgatgcttgttttttgtttcatattctag