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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGCTTAAATGGGGGAGGTCAAATCAAACCAAGTTCAGGGCAATCTCCTAAAGAACTAAGTCAGTTGTTAGAATCAGTTTACATGGAAAATgtaagtagtattatctcagagaagctagtattttaagttgcactcttctttaaaagtttgacttgcataaagatgcgtaagtgtttgtctacttctgcat...

Basic information

species Glycine max
transcript GLYMA17G01120.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192331982|gb|FK024512.1|FK024512
EST:     AATCTCCTAAAGAACTAAGTCAGTTGTTAGAATCAGTTTACATGGAAAAT                         GTTTTGGTAGCATCACCGTTTGACAATCCCATCGTTAAAGGCTTATATGAC
genomic: AATCTCCTAAAGAACTAAGTCAGTTGTTAGAATCAGTTTACATGGAAAATgtaagtagta ... tatatgctagGTTTTGGTAGCATCACCGTTTGACAATCCCATCGTTAAAGGCTTATATGAC
EST: gi|9902332|gb|BE611300.1|BE611300
EST:     AATCTCCTAAAGAACTAAGTCAGTTGTTAGAATCAGTTTACATGGAAAAT                         GTTTTGGTAGCATCACCGTTTGACAATCCCATCGTTAAAGGCTTATATGAC
genomic: AATCTCCTAAAGAACTAAGTCAGTTGTTAGAATCAGTTTACATGGAAAATgtaagtagta ... tatatgctagGTTTTGGTAGCATCACCGTTTGACAATCCCATCGTTAAAGGCTTATATGAC
EST: gi|31310021|gb|CD395224.1|CD395224
EST:     AATCTCCTAAAGAACTAAGTCAGTTGTTAGAATCAGTTTACATGGAAAAT                         GTTTTGGTAGCATCACCGTTTGACAATCCCATCGTTAAAGGCTTATATGAC
genomic: AATCTCCTAAAGAACTAAGTCAGTTGTTAGAATCAGTTTACATGGAAAATgtaagtagta ... tatatgctagGTTTTGGTAGCATCACCGTTTGACAATCCCATCGTTAAAGGCTTATATGAC
EST: gi|6482176|gb|AW201447.1|AW201447
EST:     AATCTCCTAAAGAACTAAGTCAGTTGTTAGAATCAGTTTACATGGAAAAT                         GTTTTGGTAGCATCACCGTTTGACAATCCCATCGTTAAAGGCTTATATGAC
genomic: AATCTCCTAAAGAACTAAGTCAGTTGTTAGAATCAGTTTACATGGAAAATgtaagtagta ... tatatgctagGTTTTGGTAGCATCACCGTTTGACAATCCCATCGTTAAAGGCTTATATGAC
EST: gi|14992014|gb|BI317687.1|BI317687
EST:     AATCTCCTAAAGAACTAAGTCAGTTGTTAGAATCAGTTTACATGGAAAAT                         GTTTTGGTAGCATCACCGTTTGACAATCCCATCGTTAAAGGCTTATATGAC
genomic: AATCTCCTAAAGAACTAAGTCAGTTGTTAGAATCAGTTTACATGGAAAATgtaagtagta ... tatatgctagGTTTTGGTAGCATCACCGTTTGACAATCCCATCGTTAAAGGCTTATATGAC
EST: gi|31469469|gb|CD411497.1|CD411497
EST:     AATCTCCTAAAGAACTAAGTCAGTTGTTAGAATCAGTTTACATGGAAAAT                         GTTTTGGTAGCATCACCGTTTGACAATCCCATCGTTAAAGGCTTATATGAC
genomic: AATCTCCTAAAGAACTAAGTCAGTTGTTAGAATCAGTTTACATGGAAAATgtaagtagta ... tatatgctagGTTTTGGTAGCATCACCGTTTGACAATCCCATCGTTAAAGGCTTATATGAC
EST: gi|254341393|gb|GR855121.1|GR855121
EST:     AATCTCCTAAAGAACTAAGTCAGTTGTTAGAATCAGTTTACATGGAAAAT                         GTTTTGGTAGCATCACCGTTTGACAATCCCATCGTTAAAGGCTTATATGAC
genomic: AATCTCCTAAAGAACTAAGTCAGTTGTTAGAATCAGTTTACATGGAAAATgtaagtagta ... tatatgctagGTTTTGGTAGCATCACCGTTTGACAATCCCATCGTTAAAGGCTTATATGAC
EST: gi|19269650|gb|BM885906.1|BM885906
EST:     AATCTCCTAAAGAACTAAGTCAGTTGTTAGAATCAGTTTACATGGAAAAT                         GTTTTGGTAGCATCACCGTTTGACAATCCCATCGTTAAAGGCTTATATGAC
genomic: AATCTCCTAAAGAACTAAGTCAGTTGTTAGAATCAGTTTACATGGAAAATgtaagtagta ... tatatgctagGTTTTGGTAGCATCACCGTTTGACAATCCCATCGTTAAAGGCTTATATGAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTGCTTAAATGGGGGAGGTCAAATCAAACCAAGTTCAGGGCAATCTCCTAAAGAACTAAGTCAGTTGTTAGAATCAGTTTACATGGAAAATgtaagtagtattatctcagagaagctagtattttaagttgcactcttctttaaaagtttgacttgcataaagatgcgtaagtgtttgtctacttctgcat

- - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA