Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCTTTGAAGAATTTGCACCTCAGTATTTCAAATACCTGATGGATGCCCTGAACTCAGGAGGGCCTACTTGTCTTGCCAAAATTCTTGGTATTTATCAGgtgagaactcgactcattatttgacattttacacaaacatgccagaccggtgtataaatgtaaattttatgtttacaaagtttcttgttttggtggcag

Basic information

species Glycine max
transcript GLYMA07G34030.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G34030.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv01s0011g04790.t01 (Vitis vinifera), 5'ss of exon 9
GTCCTTTGAAGAATTTGCACCTCAGTATTTCAAATACCTGATGGATGCCCTGAACTCAGGAGGGCCTACTTGTCTTGCCAAAATTCTTGGTATTTATCAGgtgagaactcgactcattatttgacattt-tacacaaacatgccagaccggtgtataaatgtaaattttatgtttacaaagtttc------ttgttttggtggcag
 || |||||| |||||||||   |||| ||||||||  |||   || | || | ||||||| | || ||||| ||||| ||||||||||||||||||||||| ||       | |||| ||||| ||||  |||   | || |  |   |||||  ||||   ||| || |  |       |||       ||| |    ||||||
TTCTTTTGAAAAATTTGCACACGAGTACTTCAAATATTTGACACATTCTCTTAGCTCAGGAAGCCCAACTTGCCTTGCTAAAATTCTTGGTATTTATCAGgttag------gcccattctttgatatttgcacatgtagatacatgggtggtgtgcaaatactaatgttgttctcttgtgattttgatttattggtccaatggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51345091|gb|CO985824.1|CO985824
EST:     TGAACTCAGGAGGGCCTACTTGTCTTGCCAAAATTCTTGGTATTTATCAG                         GTCACGGTCAAATACCCAAAAGGTGGGAAGGAAACAAAAATAGATCTGATG
genomic: TGAACTCAGGAGGGCCTACTTGTCTTGCCAAAATTCTTGGTATTTATCAGgtgagaactc ... ttggtggcagGTCACGGTCAAATACCCAAAAGGTGGGAAGGAAACAAAAATAGATCTGATG
EST: gi|193602943|gb|FK559332.1|FK559332
EST:     TGAACTCAGGAGGGCCTACTTGTCTTGCCAAAATTCTTGGTATTTATCAG                         GTCACGGTCAAATACCCAAAAGGTGGGAAGGAAACAAAAATTAGTATTCTG
genomic: TGAACTCAGGAGGGCCTACTTGTCTTGCCAAAATTCTTGGTATTTATCAGgtgagaactc ... ttggtggcagGTCACGGTCAAATACCCAAAAGGTGGGAAGGAAACAAAAAT-AG-AT-CTG