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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACGCAATCTCACTCCAATGGATCTTCCCAGAAACGTCTCCTCCGCTGCCTTGGTGGGAGACAACGCTTCGGCCACGACCACTTTGCCAATTGACTCAGgtcgatacaatcctcagtttctaatcttcatttttctcagattttagattttccaatgcgtttgaatcccttttcgatcattttcag

Basic information

species Glycine max
transcript GLYMA20G28420.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192295567|gb|FG988141.1|FG988141
EST:     CTTGGTGGGAGACAACGCTTCGGCCACGACCACTTTGCCAATTGACTCAG                         GTGCTAGAATCGGAGAGGTTAAAAGGGTCACCAAGGAGACCAATGTATCAG
genomic: CTTGGTGGGAGACAACGCTTCGGCCACGACCACTTTGCCAATTGACTCAGgtcgatacaa ... tcattttcagATGCTAGAATCGGAGAGGTTAAAAGGGTCACCAAGGAGACCAATGTATCAG
EST: gi|254323948|gb|GR836180.1|GR836180
EST:     CTTGGTGGGAGACAACGCTTCGGCCACGACCACTTTGCCAATTGACTCAG                         ATGCTAGAATCGGAGAGGTTAAAAGGGTCACCAAGGAGACCAATGTATCAG
genomic: CTTGGTGGGAGACAACGCTTCGGCCACGACCACTTTGCCAATTGACTCAGgtcgatacaa ... tcattttcagATGCTAGAATCGGAGAGGTTAAAAGGGTCACCAAGGAGACCAATGTATCAG
EST: gi|27427329|gb|CA938849.1|CA938849
EST:     CTTGGTGGGAGACAACGCTTCGGCCACGACCACTTTGCCAATTGACTCAG                         ATGCTAGAATCGGAGAGGTTAAAAGGGTCACCAAGGAGACCAATGTATCAG
genomic: CTTGGTGGGAGACAACGCTTCGGCCACGACCACTTTGCCAATTGACTCAGgtcgatacaa ... tcattttcagATGCTAGAATCGGAGAGGTTAAAAGGGTCACCAAGGAGACCAATGTATCAG
EST: gi|192298863|gb|FG987608.1|FG987608
EST:     CTTGGTGGGAGACAACGCTTCGGCCACGACCACTTTGCCAATTGACTCAG                         ATGCTAGAATCGGAGAGGTTAAAAGGGTCACCAAGGAGACCAATGTATCAG
genomic: CTTGGTGGGAGACAACGCTTCGGCCACGACCACTTTGCCAATTGACTCAGgtcgatacaa ... tcattttcagATGCTAGAATCGGAGAGGTTAAAAGGGTCACCAAGGAGACCAATGTATCAG
EST: gi|209713506|gb|BW679283.1|BW679283
EST:     CTTGGTGGGAGACAACGCTTCGGCCACGACCACTTTGCCAATTGACTCAG                         GTGCTAGAATCGGAGAGGTTAAAAGGGTCACCAAGGAGACCAATGTATCAG
genomic: CTTGGTGGGAGACAACGCTTCGGCCACGACCACTTTGCCAATTGACTCAGgtcgatacaa ... tcattttcagATGCTAGAATCGGAGAGGTTAAAAGGGTCACCAAGGAGACCAATGTATCAG
EST: gi|12691429|gb|BG157765.1|BG157765
EST:     CTTGGTGGGAGACAACGCTTCGGCCACGACCACTTTGCCAATTGACTCAG                         ATGCTAGAATCGGAGAGGTTAAAAGGGTCACCAAGGAGACCAATGTATCAG
genomic: CTTGGTGGGAGACAACGCTTCGGCCACGACCACTTTGCCAATTGACTCAGgtcgatacaa ... tcattttcagATGCTAGAATCGGAGAGGTTAAAAGGGTCACCAAGGAGACCAATGTATCAG
EST: gi|151393539|gb|EV263414.1|EV263414
EST:     CTTGGTGGGAGACAACGCTTCGGCCACGACCACTTTGCCAATTGACTCAG                         ATGCTAGAATCGGAGAGGTTAAAAGGGTCACCAAGGAGACCAATGTATCGG
genomic: CTTGGTGGGAGACAACGCTTCGGCCACGACCACTTTGCCAATTGACTCAGgtcgatacaa ... tcattttcagATGCTAGAATCGGAGAGGTTAAAAGGGTCACCAAGGAGACCAATGTATCAG
EST: gi|120528949|gb|EH257083.1|EH257083
EST:     CTTGGTGGGAGACAACGCTTCGGCCACGACCACTTTGCCAATTGACTCAG                         ATGCTAGAATCGGAGAGGTTAAAAGGGTCACCAAGGAGACCAATGTATCAG
genomic: CTTGGTGGGAGACAACGCTTCGGCCACGACCACTTTGCCAATTGACTCAGgtcgatacaa ... tcattttcagATGCTAGAATCGGAGAGGTTAAAAGGGTCACCAAGGAGACCAATGTATCAG
EST: gi|298186844|gb|HO033943.1|HO033943
EST:     CTTGGTGGGAGACAACGCTTCGGCCACGACCACTTTGCCAATTGACTCAG                         GTGCTAGAATCGGAGAGGTTAAAAGGGTCACCAAGGAGACCAATGTATCAG
genomic: CTTGGTGGGAGACAACGCTTCGGCCACGACCACTTTGCCAATTGACTCAGgtcgatacaa ... tcattttcagATGCTAGAATCGGAGAGGTTAAAAGGGTCACCAAGGAGACCAATGTATCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAACGCAATCTCACTCCAATGGATCTTCCCAGAAACGTCTCCTCCGCTGCCTTGGTGGGAGACAACGCTTCGGCCACGACCACTTTGCCAATTGACTCAGgtcgatacaatcctcagtttctaatcttcatttttctcagattttagattttccaatgcgtttgaatcccttttcgatcattttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG