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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAATTATACGTTTCTTTTCTTCCCCGTCTCAACTCAATTCCATTCTCTTCTCTGAGTCTCAACCTAATTCCCCATTCATCCATCTTTACGTGTTTGTTGGgtatgtcaaaatcctttcttcgaccttccttactcacacatacacgttattatgtttcgtttctaatgtttcgctgtttgaaattttcag

Basic information

species Glycine max
transcript GLYMA17G01650.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27426553|gb|CA938073.1|CA938073
EST:     TCTGAGTCTCAACCTAATTCCCCATTCATCCATCTTTACGTGTTTGTTGG                         ATTCCATGGCCAAAAGCTCCTTCAAGCTTGAACATCCCTTGG
genomic: TCTGAGTCTCAACCTAATTCCCCATTCATCCATCTTTACGTGTTTGTTGGgtatgtcaaa ... aaattttcagATTCCATGGCCAAAAGCTCCTTCAAGCTTGAACATCCCTTGG
EST: gi|208148085|gb|GD949715.1|GD949715
EST:     TCTGAGTCTCAACCTAATTCCCCATTCATCCATCTTTACGTGTTTGTTGG                         ATTCCATGGCCAAAAGCTCCTTCAAGCTTGAACATCCCTTGG
genomic: TCTGAGTCTCAACCTAATTCCCCATTCATCCATCTTTACGTGTTTGTTGGgtatgtcaaa ... aaattttcagATTCCATGGCCAAAAGCTCCTTCAAGCTTGAACATCCCTTGG
EST: gi|298173214|gb|HO020198.1|HO020198
EST:     TCTGAGTCTCAACCTAATTCCCCATTCATCCATCTTTACGTGTTTGTTGG                         ATTCCATGGCCAAAAGCTCCTTCAAGCTTGAACATCCCTTGG
genomic: TCTGAGTCTCAACCTAATTCCCCATTCATCCATCTTTACGTGTTTGTTGGgtatgtcaaa ... aaattttcagATTCCATGGCCAAAAGCTCCTTCAAGCTTGAACATCCCTTGG
EST: gi|207752825|gb|GD724663.1|GD724663
EST:     GTCTCAACCTAATTCCCCATTCATCCATCTTTACGTGTTTGTTGG                         ATTCCATGGCCAAAAGCTCCTTCAAGCTTGAACATCCCTTGG
genomic: GTCTCAACCTAATTCCCCATTCATCCATCTTTACGTGTTTGTTGGgtatgtcaaa ... aaattttcagATTCCATGGCCAAAAGCTCCTTCAAGCTTGAACATCCCTTGG
EST: gi|16276100|gb|BI941679.1|BI941679
EST:     TCTGAGTCTCAACCTAATTCCCCATTCATCCATCTTTACGTGTTAGTTGG                         ATTCCATGGCCAAAAGCTCCTTCAAGCTTGAACATCCCTTGG
genomic: TCTGAGTCTCAACCTAATTCCCCATTCATCCATCTTTACGTGTTTGTTGGgtatgtcaaa ... aaattttcagATTCCATGGCCAAAAGCTCCTTCAAGCTTGAACATCCCTTGG
EST: gi|151395677|gb|EV265554.1|EV265554
EST:     TCTGAGTCTCAACCTAATTCCCCATTCATCCATCTTTACGTGTTTGTTGG                         ATTCCATGGCCAAAAGCTCCTTCAAGCTTGAACATCCCTTGG
genomic: TCTGAGTCTCAACCTAATTCCCCATTCATCCATCTTTACGTGTTTGTTGGgtatgtcaaa ... aaattttcagATTCCATGGCCAAAAGCTCCTTCAAGCTTGAACATCCCTTGG
EST: gi|207715674|gb|GD697474.1|GD697474
EST:     GAGTCTCAACCTAATTCCCCATTCATCCATCTTTACGTGTTTGTTGG                         ATTCCATGGCCAAAAGCTCCTTCAAGCTTGAACATCCCTTGG
genomic: GAGTCTCAACCTAATTCCCCATTCATCCATCTTTACGTGTTTGTTGGgtatgtcaaa ... aaattttcagATTCCATGGCCAAAAGCTCCTTCAAGCTTGAACATCCCTTGG
EST: gi|192300085|gb|FG991875.1|FG991875
EST:     TCTGAGTCTCAACCTAATTCCCCATTCATCCATCTTTACGTGTTTGTTGG                         ATTCCATGGCCAAAAGCTCCTTCAAGCTTGAACATCCCTTGG
genomic: TCTGAGTCTCAACCTAATTCCCCATTCATCCATCTTTACGTGTTTGTTGGgtatgtcaaa ... aaattttcagATTCCATGGCCAAAAGCTCCTTCAAGCTTGAACATCCCTTGG