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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGAGATCAACTTCCTGCAGCACCCCCACCCTCCTCCACCGCGTAAAGTCGAGACCTTTCCTCCTCAAAATGTTGCCCCTCCTCAAGTGCCCAAAGAAAGgtgcgatttttcgtatgcccttttgttttgctattcaagttcttaactgggtgagtcttcatggggtttgtcgttgtcccgttaattaattaagatctta...

Basic information

species Glycine max
transcript GLYMA17G01230.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193536407|gb|FK492755.1|FK492755
EST:     GAGACCTTTCCTCCTCAAAATGTTGCCCCTCCTCAAGTGCCCAAAGAAAG                         TGTGCAAACTG
genomic: GAGACCTTTCCTCCTCAAAATGTTGCCCCTCCTCAAGTGCCCAAAGAAAGgtgcgatttt ... gatttaccagTGTGCAAACTG
EST: gi|193406468|gb|FK371773.1|FK371773
EST:     GAGACCTTTCCTCCTCAAAATGTTGCCCCTCCTCAAGTGCCCAAAGAAAG                         TGTGCAAACTGGAAGCAAAA
genomic: GAGACCTTTCCTCCTCAAAATGTTGCCCCTCCTCAAGTGCCCAAAGAAAGgtgcgatttt ... gatttaccagTGTGCAAACTGGAAGCAAAA
EST: gi|208074479|gb|GD871210.1|GD871210
EST:     GAGACCTTTCCTCCTCAAAATGTTGCCCCTCCTCAAGTGCCCAAAGAAAG                         TGTGCAAACTGGAAGCAAAAGTAAGAGGTGGTGCTGGTGGTCTAAACAAAG
genomic: GAGACCTTTCCTCCTCAAAATGTTGCCCCTCCTCAAGTGCCCAAAGAAAGgtgcgatttt ... gatttaccagTGTGCAAACTGGAAGCAAAAG-AAGAGGTGGTGCTGGTGGTCTAAACAAAG
EST: gi|192314883|gb|FK010701.1|FK010701
EST:     GAGACCTTTCCTCCTCAAAATGTTGCCCCTCCTCAAGTGCCCAAAGAAAG                         TGTGCAAACTGGAAGCAAAAGAAGAGGTGGTGCTGGTGGTCTAAACAAAGT
genomic: GAGACCTTTCCTCCTCAAAATGTTGCCCCTCCTCAAGTGCCCAAAGAAAGgtgcgatttt ... gatttaccagTGTGCAAACTGGAAGCAAAAGAAGAGGTGGTGCTGGTGGTCTAAACAAAGT
EST: gi|298171362|gb|HO016394.1|HO016394
EST:     GAGACCTTTCCTCCTCAAAATGTTGCCCCTCCTCAAGTGCCCAAAGAAAG                         TGTGCAAACTGGAAGCAAAAGA
genomic: GAGACCTTTCCTCCTCAAAATGTTGCCCCTCCTCAAGTGCCCAAAGAAAGgtgcgatttt ... gatttaccagTGTGCAAACTGGAAGCAAAAGA
EST: gi|298176041|gb|HO015446.1|HO015446
EST:     GAGACCTTTCCTCCTCAAAATGTTGCCCCTCCTCAAGTGCCCAAAGAAAG                         TGTGCAAACTGGAAGCAAAAGAAGAGGTGGTGCTGGTGGTCTAAACAA
genomic: GAGACCTTTCCTCCTCAAAATGTTGCCCCTCCTCAAGTGCCCAAAGAAAGgtgcgatttt ... gatttaccagTGTGCAAACTGGAAGCAAAAGAAGAGGTGGTGCTGGTGGTCTAAACAA
EST: gi|15813315|gb|BI785590.1|BI785590
EST:     GAGACCTTTCCTCCTCAAAATGTTGCCCCTCCTCAAGTGCCCAAAGAAAG                         TGTGCAAACTGGAAGCAAAAGAAGAGGTGGTGCTGGTGGTCTAAACAAAGT
genomic: GAGACCTTTCCTCCTCAAAATGTTGCCCCTCCTCAAGTGCCCAAAGAAAGgtgcgatttt ... gatttaccagTGTGCAAACTGGAAGCAAAAGAAGAGGTGGTGCTGGTGGTCTAAACAAAGT
EST: gi|298167521|gb|HO012784.1|HO012784
EST:     GAGACCTTTCCTCCTCAAAATGTTGCCCCTCCTCAAGTGCCCAAAGAAAG                         TGTGCAAACTGGAAGCAAAAGAAGAGGTGGTGCTGGTGGT
genomic: GAGACCTTTCCTCCTCAAAATGTTGCCCCTCCTCAAGTGCCCAAAGAAAGgtgcgatttt ... gatttaccagTGTGCAAACTGGAAGCAAAAGAAGAGGTGGTGCTGGTGGT
EST: gi|207749107|gb|GD717739.1|GD717739
EST:     GAGACCTTTCCTCCTCAAAATGTTGCCCCTCCTCAAGTGCCCAAAGAAAG                         TGTGCAAACTGGAAGCAAAAGAAGGGGTGGTGCTGGTGGTCTAAACAAAGT
genomic: GAGACCTTTCCTCCTCAAAATGTTGCCCCTCCTCAAGTGCCCAAAGAAAGgtgcgatttt ... gatttaccagTGTGCAAACTGGAAGCAAAAGAAGAGGTGGTGCTGGTGGTCTAAACAAAGT
EST: gi|208207075|gb|GE006716.1|GE006716
EST:     GAGACCCTTCCTCCTCAAAATGTTGCCCCTCCTCAAGTGCCCAAAGAAAG                         TGTGCAAACTGGAAGCAAAAGAAGAGGTGGTGCTGGTGGTCTAAACAAAGT
genomic: GAGACCTTTCCTCCTCAAAATGTTGCCCCTCCTCAAGTGCCCAAAGAAAGgtgcgatttt ... gatttaccagTGTGCAAACTGGAAGCAAAAGAAGAGGTGGTGCTGGTGGTCTAAACAAAGT
EST: gi|208088597|gb|GD885229.1|GD885229
EST:     GAGACCTTTCCTCCTC-AAATGTTG-CCCTCCTCAAGTGCCCAAAGAAAG                         TGTGCAAACTGGAAGCAAAAGAAGAGGTGGTGCTGGTGGTCTAAACAAAGT
genomic: GAGACCTTTCCTCCTCAAAATGTTGCCCCTCCTCAAGTGCCCAAAGAAAGgtgcgatttt ... gatttaccagTGTGCAAACTGGAAGCAAAAGAAGAGGTGGTGCTGGTGGTCTAAACAAAGT
EST: gi|151409070|gb|EV278878.1|EV278878
EST:     GAGACCTTTCCTCCTCAAAATGTTGCCCCTCCTCAAGTGCCCAAAGAAAG                         TGTGCAAACTGGAAGCAAAAGAAGAGGTGGTGCTGGTGGTCTAAACAAAGT
genomic: GAGACCTTTCCTCCTCAAAATGTTGCCCCTCCTCAAGTGCCCAAAGAAAGgtgcgatttt ... gatttaccagTGTGCAAACTGGAAGCAAAAGAAGAGGTGGTGCTGGTGGTCTAAACAAAGT
EST: gi|208221407|gb|GE018599.1|GE018599
EST:     GAGACCTTTCCTCCTCAAAATGTTGCCCCTCCTCAAGTGCCCAAAGAAAG                         TGTGCAAACTGGAAGCAAAAGAAGAGGTGGTGCTGGTGGTCTAAACAAAGT
genomic: GAGACCTTTCCTCCTCAAAATGTTGCCCCTCCTCAAGTGCCCAAAGAAAGgtgcgatttt ... gatttaccagTGTGCAAACTGGAAGCAAAAGAAGAGGTGGTGCTGGTGGTCTAAACAAAGT
EST: gi|192329210|gb|FK020129.1|FK020129
EST:     GAGACCTTTCCTCCTCAAAATGTTGCCCCTCCTCAAGTGCCCAAAGAAAG                         TGTGCAAACTGGAAGCAAAAGAAGAGGTGGTGCTGGTGGTCTAAACAAAGT
genomic: GAGACCTTTCCTCCTCAAAATGTTGCCCCTCCTCAAGTGCCCAAAGAAAGgtgcgatttt ... gatttaccagTGTGCAAACTGGAAGCAAAAGAAGAGGTGGTGCTGGTGGTCTAAACAAAGT
EST: gi|17964063|gb|BM270804.1|BM270804
EST:     GAGACCTTTCCTCCTCAAAATGTTGCCCCTCCTCAAGTGCCCAAAGAAAG                         TGTGCAAACTGGAAGCAAAAGAAGAGGTGGTGCTGGTGGTCTAAACAAAGT
genomic: GAGACCTTTCCTCCTCAAAATGTTGCCCCTCCTCAAGTGCCCAAAGAAAGgtgcgatttt ... gatttaccagTGTGCAAACTGGAAGCAAAAGAAGAGGTGGTGCTGGTGGTCTAAACAAAGT
EST: gi|14259156|gb|BG882064.1|BG882064
EST:     GAGACCTTTCCTCCTCAAAATGTTGCCCCTCCTCAAGTGCCCAAAGAAAG                         TGTGCAAACTGG
genomic: GAGACCTTTCCTCCTCAAAATGTTGCCCCTCCTCAAGTGCCCAAAGAAAGgtgcgatttt ... gatttaccagTGTGCAAACTGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACGAGATCAACTTCCTGCAGCACCCCCACCCTCCTCCACCGCGTAAAGTCGAGACCTTTCCTCCTCAAAATGTTGCCCCTCCTCAAGTGCCCAAAGAAAGgtgcgatttttcgtatgcccttttgttttgctattcaagttcttaactgggtgagtcttcatggggtttgtcgttgtcccgttaattaattaagatctta

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA