Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATGTTTAGTTTTCCAACCAAAAACGTTGTCTTTGATTTCTTTTCTCTTTAGCTGCTTCTTTTGTCTCTCCAAACTAACATCCAGATTGCTCTGTTACTgtgagtgatttgggtttttgttgttatataattataaaactaaaactgcatcatcctttttcatatcatattctttctgttgttttcag

Basic information

species Glycine max
transcript GLYMA17G00910.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213587273|gb|DB965935.1|DB965935
EST:     GCTGCTTCTTTTGTCTCTCCAAACTAACATCCAGATTGCTCTGTTACT                         ATCAAAAGGCCTTCTTTCCTCATTTCGGACGCACGCTCCCCATCCATGTCT
genomic: GCTGCTTCTTTTGTCTCTCCAAACTAACATCCAGATTGCTCTGTTACTgtgagtgatt ... ttgttttcagATCAAAAGGCCTTCTTTCCTCATTTCGGACGCACGCTCCCCATCCATGTCT
EST: gi|18730350|gb|BM525828.1|BM525828
EST:     TAGCTGCTTCTTTTGTCTCTCCAAACTAACATCCAGATTGCTCTGTTACT                         ATCAAAAGGCCTTCTTTCCTCATTTCGGACGCACGCTCCCCATCCATGTCT
genomic: TAGCTGCTTCTTTTGTCTCTCCAAACTAACATCCAGATTGCTCTGTTACTgtgagtgatt ... ttgttttcagATCAAAAGGCCTTCTTTCCTCATTTCGGACGCACGCTCCCCATCCATGTCT
EST: gi|9986219|gb|BE660327.1|BE660327
EST:     AGATTGCTCTGTTACT                         ATCAAAAGGCCTTCTTTCCTCATTTCGGACGCACGCTCCCCATCCATGTCT
genomic: AGATTGCTCTGTTACTgtgagtgatt ... ttgttttcagATCAAAAGGCCTTCTTTCCTCATTTCGGACGCACGCTCCCCATCCATGTCT
EST: gi|298194892|gb|HO043364.1|HO043364
EST:     ATCCAGATTGCTCTGTTACT                         ATCAAAAGGCCTTCTTTCCTCATTTCGGACGCACGCTCCCCATCCATGTCT
genomic: ATCCAGATTGCTCTGTTACTgtgagtgatt ... ttgttttcagATCAAAAGGCCTTCTTTCCTCATTTCGGACGCACGCTCCCCATCCATGTCT
EST: gi|192294916|gb|FG986639.1|FG986639
EST:     TAGCTGCTTCTTTTGTCTCTCCAAACTAACATCCAGATTGCTCTGTTACT                         ATCAAAAGGCCTTCTTTCCTCATTTCGGACGCACGCTCCCCATCCATGTCT
genomic: TAGCTGCTTCTTTTGTCTCTCCAAACTAACATCCAGATTGCTCTGTTACTgtgagtgatt ... ttgttttcagATCAAAAGGCCTTCTTTCCTCATTTCGGACGCACGCTCCCCATCCATGTCT
EST: gi|213613699|gb|DB963345.1|DB963345
EST:     TAGCTGCTTCTTTTGTCTCTCCAAACTAACATCCAGATTGCTCTGTTACT                         ATCAAAAGGCCTTTTTTCCTCATTTCGGACGCACGCTCCCCATCCATGTCT
genomic: TAGCTGCTTCTTTTGTCTCTCCAAACTAACATCCAGATTGCTCTGTTACTgtgagtgatt ... ttgttttcagATCAAAAGGCCTTCTTTCCTCATTTCGGACGCACGCTCCCCATCCATGTCT
EST: gi|19452347|gb|BM953757.1|BM953757
EST:     CTCCAAACTAACATCCAGATTGCTCTGTTACT                         ATCAAAAGGCCTTCTTTCCTCATTTCGGACGCACGCTCCCCATCCATGTCT
genomic: CTCCAAACTAACATCCAGATTGCTCTGTTACTgtgagtgatt ... ttgttttcagATCAAAAGGCCTTCTTTCCTCATTTCGGACGCACGCTCCCCATCCATGTCT
EST: gi|14259973|gb|BG882881.1|BG882881
EST:     TAGCTGCTTCTTTTGTCTCTCCAAACTAACATCCAGATTGCTCTGTTACT                         ATCAAAAGGCCTTCTTTCCTCATTTCGGACGCACGCTCCCCATCCATGTCT
genomic: TAGCTGCTTCTTTTGTCTCTCCAAACTAACATCCAGATTGCTCTGTTACTgtgagtgatt ... ttgttttcagATCAAAAGGCCTTCTTTCCTCATTTCGGACGCACGCTCCCCATCCATGTCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCATGTTTAGTTTTCCAACCAAAAACGTTGTCTTTGATTTCTTTTCTCTTTAGCTGCTTCTTTTGTCTCTCCAAACTAACATCCAGATTGCTCTGTTACTgtgagtgatttgggtttttgttgttatataattataaaactaaaactgcatcatcctttttcatatcatattctttctgttgttttcag

- - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT