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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTTATTCGGAACGGCCACGTCTGCGTACCAAGTGGAGGGTATGGCCCACAAAGACGGTCGCGGCCCAAGCATTTGGGACGTCTTCATCAAAAAACCCGgttcgtcaacattctcatttcaattcttctctttcatcttctttcatcattcatcttcaaacttcaaaccatatcaaaataatgcgtttcgtgtcgtgac...

Basic information

species Glycine max
transcript GLYMA09G30910.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G30910.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os01g32364.1 (Oryza sativa), 5'ss of exon 1
TTCTTATTCGGAACGGCCACGTCTGCGTACCAAGTGGAGGGTATGGCCCACAAAGACGGTCGCGGCCCAAGCATTTGGGACGTCTTCATCAAAAAACCCGgttcgtcaac--attctcatttcaattcttctctttcatcttctttcatcattcatcttcaaacttcaaaccatatcaaaataatgcgtttcgtgtcgtgac
||| | ||||| |||||  |||| |||||||| |||||||| ||||| | ||| || || |||||||| ||||||||||||| |||| |||| |  ||||||  |  ||   |    |  |||| ||     || |  |  ||    |  | ||    |  |  ||      | ||     ||||   |      |  ||  
TTCGTGTTCGGGACGGCGGCGTCGGCGTACCAGGTGGAGGGCATGGCGCTCAAGGATGGCCGCGGCCCTAGCATTTGGGACGCCTTCGTCAAGACTCCCGgtgagcaaattaaggaaccgttcattttgatgctatttttatcaaaaaaaaatctatatttactttgttggtaaatttggttaatatatgagaaattctg--

upper sequence: GLYMA09G30910.1 (Glycine max), 5'ss of exon 1
lower sequence: AC234160.1_FGT003 (Zea mays), 5'ss of exon 1
TTCTTATTCGGAACGGCCACGTCTGCGTACCAAGTGGAGGGTATGGCCCACAAAGACGGTCGCGGCCCAAGCATTTGGGACGTCTTCATCAAAAAACCCGgttcgtcaacattctcatttcaattcttct-ctttcatcttctttcatcattcatcttcaaacttcaaaccatatcaaaat--aatgcgtttcgtgtcgtgac-------------------------------------------------------------------------
||| | ||||| |||||  |||| || ||||| |||||||| ||||| ||||| ||||| ||||| || ||||||||||||| ||||||||| |  ||||||  | || ||  |||||| |       |  |  | |||        || || ||  | |   |  ||||  ||  | | |   |||  || | | |    |                                                                          
TTCGTGTTCGGGACGGCGGCGTCGGCCTACCAGGTGGAGGGCATGGCGCACAAGGACGGCCGCGGGCCGAGCATTTGGGACGCCTTCATCAAGATCCCCGgtgag-cagcacactcattccgtcggcgcggcgctgatcggaccgtttcgtttatactgacgatg-aaacagtagtacacttgtatggattgcatatgaaaatgcatcgatcgtggattgaattggcttgacatggttggatcatggcatggcaatggcggcgtcctgcttttcag

upper sequence: GLYMA09G30910.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv17s0000g02680.t01 (Vitis vinifera), 5'ss of exon 1
TTCTTATTCGGAACGGCCACGTCTGCGTACCAAGTGGAGGGTATGGCCCACAAAGACGGTCGCGGCCCAAGCATTTGGGACGTCTTCATCAAAAAACCCGgttcgtcaacattctcatttcaattcttctctttcatcttctttcatcattcatcttcaaacttcaaaccatatcaaaataatgcgtttcgtgtcgtgac-------------
||| | ||||| || |||||||| || ||||| || ||||| |||||  |||| ||||| || || |||||||||||||| ||||||||   ||||||||||    |    || |  |||   ||  | | |||     | ||   | |||  | |  | | | |       || |   |  |   |||  |    | |              
TTCGTCTTCGGCACCGCCACGTCAGCTTACCAGGTCGAGGGCATGGCTGACAAGGACGGCCGAGGACCAAGCATTTGGGATGTCTTCATTCGAAAACCCGgta-accgttttttttttttttttttgtatttttggaagttttaatttatttttttctacattactgttgtgattattgtttttttttttttaa-ataatttttggggagcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213604894|gb|DB960575.1|DB960575
EST:     CAAAGACGGTCGCGGCCCAAGCATTTGGGACGTCTTCATCAAAAAACCCG                         GGATTGTCGCAAATAATGGCACGGGAGAAGTTTCTGTTGATCAGTACCATC
genomic: CAAAGACGGTCGCGGCCCAAGCATTTGGGACGTCTTCATCAAAAAACCCGgttcgtcaac ... tacaaaacagGGATTGTCGCAAATAATGGCACGGGAGAAGTTTCTGTTGATCAGTACCATC
EST: gi|209710515|gb|BW662051.1|BW662051
EST:     CAAAGACGGTCGCGGCCCAAGCATTTGGAACGTCTTCATCAAAAAACCCG                         GGATTGTCGCAAATAATGGCACGGGAGAAGTTTCTGTTGATCAGTACCATC
genomic: CAAAGACGGTCGCGGCCCAAGCATTTGGGACGTCTTCATCAAAAAACCCGgttcgtcaac ... tacaaaacagGGATTGTCGCAAATAATGGCACGGGAGAAGTTTCTGTTGATCAGTACCATC
EST: gi|193650337|gb|FK598092.1|FK598092
EST:     CAAAGACGGTCGCGGCCCAAGCATTTGGGACGTCTTCATCAAAAAACCCG                         GGATTGTCGCAAATAATGGCACGGGAGGAGTTTCTGTTGATCAGTACCATC
genomic: CAAAGACGGTCGCGGCCCAAGCATTTGGGACGTCTTCATCAAAAAACCCGgttcgtcaac ... tacaaaacagGGATTGTCGCAAATAATGGCACGGGAGAAGTTTCTGTTGATCAGTACCATC
EST: gi|208079829|gb|GD874099.1|GD874099
EST:     CAAAGACGGTCGCGGCCCAAGCATTTGGGACGTCTTCATCAAAAAACCCG                         GGATTGTCGCAAATAATGGCACGGGAGAAGTTTCTGTTGATCAGTACCATC
genomic: CAAAGACGGTCGCGGCCCAAGCATTTGGGACGTCTTCATCAAAAAACCCGgttcgtcaac ... tacaaaacagGGATTGTCGCAAATAATGGCACGGGAGAAGTTTCTGTTGATCAGTACCATC
EST: gi|213619687|gb|DB965633.1|DB965633
EST:     CAAAGACGGTCGCGGCCCAAGCATTTGGGACGTCTTCATCAAAAA-CCCG                         GGATTGTCGCAAATAATGGCACGGGAGAAGTTTCT-TTGATCAGTACCATC
genomic: CAAAGACGGTCGCGGCCCAAGCATTTGGGACGTCTTCATCAAAAAACCCGgttcgtcaac ... tacaaaacagGGATTGTCGCAAATAATGGCACGGGAGAAGTTTCTGTTGATCAGTACCATC
EST: gi|208291083|gb|GE081551.1|GE081551
EST:     CAAAGACGGTCGCGGCCCAAGCATTTGGGACGTCTTCATCAAAAAACCCG                         GGATTGTCGCAAATAATGGCACGGGAGAAGTTTCTGTTGATCAGTACCATC
genomic: CAAAGACGGTCGCGGCCCAAGCATTTGGGACGTCTTCATCAAAAAACCCGgttcgtcaac ... tacaaaacagGGATTGTCGCAAATAATGGCACGGGAGAAGTTTCTGTTGATCAGTACCATC
EST: gi|193363574|gb|FK331298.1|FK331298
EST:     CAAAGACGGTCGCGGCCCAAGCATTTGGGACGTCTTCATCAAAAAACCCG                         GGATTGTCGCAAATAATGGCACGGGAGAAGTTTCTGTTGATCAGTACCATC
genomic: CAAAGACGGTCGCGGCCCAAGCATTTGGGACGTCTTCATCAAAAAACCCGgttcgtcaac ... tacaaaacagGGATTGTCGCAAATAATGGCACGGGAGAAGTTTCTGTTGATCAGTACCATC
EST: gi|193709892|gb|FK642142.1|FK642142
EST:     CAAAGACGGTCGCGGCCCAAGCATTTGGGACGTCTTCATCAAAAAACCCG                         GGATTGTCGCAAATAATGGCACGGGAGAAGTTTCTGTTGATCAGTACCATC
genomic: CAAAGACGGTCGCGGCCCAAGCATTTGGGACGTCTTCATCAAAAAACCCGgttcgtcaac ... tacaaaacagGGATTGTCGCAAATAATGGCACGGGAGAAGTTTCTGTTGATCAGTACCATC
EST: gi|208110084|gb|GD907214.1|GD907214
EST:     CAAAGACGGTCGCGGCCCAAGCATTTGGGACGTCTTCATCAAAAAACCCG                         GGATTGTCGCAAATAATGGCACGGGAGAAGTTTCTGTTGATCAGTACCATC
genomic: CAAAGACGGTCGCGGCCCAAGCATTTGGGACGTCTTCATCAAAAAACCCGgttcgtcaac ... tacaaaacagGGATTGTCGCAAATAATGGCACGGGAGAAGTTTCTGTTGATCAGTACCATC
EST: gi|192332517|gb|FK025622.1|FK025622
EST:     CAAAGACGGTCGCGGCCCAAGCATTTGGGACGTCTTCATCAAAAAACCCG                         GGATTGTCGCAAATAATGGCACGGGAGAAGTTTCTGTTGATCAGTACCATC
genomic: CAAAGACGGTCGCGGCCCAAGCATTTGGGACGTCTTCATCAAAAAACCCGgttcgtcaac ... tacaaaacagGGATTGTCGCAAATAATGGCACGGGAGAAGTTTCTGTTGATCAGTACCATC
EST: gi|298166439|gb|HO009878.1|HO009878
EST:     CAAAGACGGTCGCGGCCCAAGCATTTGGGACGTCTTCATCAAAAAACCCG                         GGATTGTCGCAAATAATGGCACGGGAGAAGTTTCTGTTGATCAGTACCATC
genomic: CAAAGACGGTCGCGGCCCAAGCATTTGGGACGTCTTCATCAAAAAACCCGgttcgtcaac ... tacaaaacagGGATTGTCGCAAATAATGGCACGGGAGAAGTTTCTGTTGATCAGTACCATC
EST: gi|209702642|gb|BW652737.1|BW652737
EST:     CAAAGACGGTCGCGGCCCAAGCATTTGGGACGTCTTCATCAAAAAACCCG                         GGATTGTCGCAAATAATGGCACGGGAGAAGTTTCTGTTGATCAGTACCATC
genomic: CAAAGACGGTCGCGGCCCAAGCATTTGGGACGTCTTCATCAAAAAACCCGgttcgtcaac ... tacaaaacagGGATTGTCGCAAATAATGGCACGGGAGAAGTTTCTGTTGATCAGTACCATC
EST: gi|209718599|gb|BW674725.1|BW674725
EST:     CAAAGACGGTCGCGGCCCAAGCATTTGGAACGTCTTCATCAAAAAACCCG                         GGATTGTCGCAAATAATGGCACGGGAGAAGTTTCTGTTGATCAGTACCATC
genomic: CAAAGACGGTCGCGGCCCAAGCATTTGGGACGTCTTCATCAAAAAACCCGgttcgtcaac ... tacaaaacagGGATTGTCGCAAATAATGGCACGGGAGAAGTTTCTGTTGATCAGTACCATC
EST: gi|208092374|gb|GD885491.1|GD885491
EST:     AAGCATTTGGGACGTCTTCATCAAAAAACCCG                         GGATTGTCGCAAATAATGGCACGGGAGAAGTTTCTGTTGATCAGTACCATC
genomic: AAGCATTTGGGACGTCTTCATCAAAAAACCCGgttcgtcaac ... tacaaaacagGGATTGTCGCAAATAATGGCACGGGAGAAGTTTCTGTTGATCAGTACCATC