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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTTATTCGGAACGGCGACGTCTGCGTACCAAGTGGAGGGTATGGCCCACAAAGACGGTCGCGGCCCAAGCATTTGGGACCTCTTCATCAAAAAACCCGgttcgtcaacattctctgttcaattattttattttttaattattaatttttatgttcaatttcagttatttcattattgatcttaacgcgtgacgtcact...

Basic information

species Glycine max
transcript GLYMA07G11310.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G11310.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os01g32364.1 (Oryza sativa), 5'ss of exon 1
TTCTTATTCGGAACGGCGACGTCTGCGTACCAAGTGGAGGGTATGGCCCACAAAGACGGTCGCGGCCCAAGCATTTGGGACCTCTTCATCAAAAAACCCGgttcgtcaac--attctctgttcaatt--attttattttttaattattaatttttatgttcaatttcagttatttcattattgatcttaacgcgtgacgtcact
||| | ||||| |||||| |||| |||||||| |||||||| ||||| | ||| || || |||||||| ||||||||||||  |||| |||| |  ||||||  |  ||   |    | ||||| ||  ||  |||||||     |  ||  | ||| || | |||  |||  |  |||  || |    |   | ||  |    
TTCGTGTTCGGGACGGCGGCGTCGGCGTACCAGGTGGAGGGCATGGCGCTCAAGGATGGCCGCGGCCCTAGCATTTGGGACGCCTTCGTCAAGACTCCCGgtgagcaaattaaggaaccgttcattttgatgctatttttatcaaaaaaaaatctatatttacttt--gttggtaaatt--tggttaatatatgagaaattctg

upper sequence: GLYMA07G11310.1 (Glycine max), 5'ss of exon 1
lower sequence: AC234160.1_FGT003 (Zea mays), 5'ss of exon 1
TTCTTATTCGGAACGGCGACGTCTGCGTACCAAGTGGAGGGTATGGCCCACAAAGACGGTCGCGGCCCAAGCATTTGGGACCTCTTCATCAAAAAACCCGgttcgtca-acattc--tctgtt----------caattattttattttttaattattaatttttatgttcaatttcagttat-ttcattattgatcttaacgcgtga--cgtcact----------------------------------------------------------
||| | ||||| |||||| |||| || ||||| |||||||| ||||| ||||| ||||| ||||| || ||||||||||||  ||||||||| |  ||||||  |    ||| ||  || ||             ||       |||  |   || | |   | |      | | || || | |  |||    ||   || || |    |||   |                                                          
TTCGTGTTCGGGACGGCGGCGTCGGCCTACCAGGTGGAGGGCATGGCGCACAAGGACGGCCGCGGGCCGAGCATTTGGGACGCCTTCATCAAGATCCCCGgtgagcagcacactcattccgtcggcgcggcgctgatcggaccgtttcgtttatactgacgatgaaacagtagtacacttgtatggattgcatatgaaaatgcatcgatcgtggattgaattggcttgacatggttggatcatggcatggcaatggcggcgtcctgcttttcag

upper sequence: GLYMA07G11310.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv14s0006g01790.t01 (Vitis vinifera), 5'ss of exon 1
TTCTTATTCGGAACGGCGACGTCTGCGTACCAAGTGGAGGGTATGGCCCACAAAGACGGTCGCGGCCCAAGCATTTGGGACCTCTTCATCAAAAAACCCGgttcgtcaacattctctgtt--caattattttattttttaattattaatttttatgttcaatttcagtt-atttcattattgatcttaacgcgtgacgtcact
||||| |||||||||||| |||| |||||||| |||||||| ||| || | || |  ||  | || ||| ||||||||||||  |   |||||| ||| |||  |     ||||||  ||  || |   |   |   ||  || ||| || || | |     |    |  ||   | ||   ||  |    |           
TTCTTGTTCGGAACGGCGTCGTCGGCGTACCAGGTGGAGGGAATGACCGATAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTGgtcagattctattctcactttgcattggatccttgcctttcttcttacttcttctatgtgtctctgatggatgagagtaaaaatggtggtacag---------