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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCTCTTCCATTTTATACACCAGTATCGCTCTGTATTTGTCTCATCCTCCTAACTGAACCCTAATTTCTTCTGGGAAACTCTATTTTCTCTAATATGGAGgtaacccctttctctttcttcattctttatcactgccaccgatcgcgatctatagttgttcaccgacggaaacacctcccttatctcttgctccctcatt...

Basic information

species Glycine max
transcript GLYMA05G02810.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151406312|gb|EV276127.1|EV276127
EST:     TAACTGAACCCTAATTTCTTCTGGGAAACTCTATTTTCTCTAATATGGAG                         CAATACTGGTCTGGGAGTGCCATCAATGAAAACAAAGGAATGGTAGATAAT
genomic: TAACTGAACCCTAATTTCTTCTGGGAAACTCTATTTTCTCTAATATGGAGgtaacccctt ... aaaaatacagCAATACTGGTCTGGGAGTGCCATCAATGAAAACAAAGGAATGGTAGATAAT
EST: gi|298198196|gb|HO039735.1|HO039735
EST:     TAACTGAACCCTAATTTCTTCTGGGAAACTCTATTTTCTCTAATATGGAG                         CAATACTGGTCTGGGAGTGCCATCAATGAAAACAAAGGAATGGTAGATAAT
genomic: TAACTGAACCCTAATTTCTTCTGGGAAACTCTATTTTCTCTAATATGGAGgtaacccctt ... aaaaatacagCAATACTGGTCTGGGAGTGCCATCAATGAAAACAAAGGAATGGTAGATAAT
EST: gi|151406582|gb|EV276397.1|EV276397
EST:     TAACTGAACCCTAATTTCTTCTGGGAAACTCTATTTTCTCTAATATGGAG                         CAATACTGGTCTGGGAGTGCCATCAATGAAAACAAAGGAATGGTAGATAAT
genomic: TAACTGAACCCTAATTTCTTCTGGGAAACTCTATTTTCTCTAATATGGAGgtaacccctt ... aaaaatacagCAATACTGGTCTGGGAGTGCCATCAATGAAAACAAAGGAATGGTAGATAAT
EST: gi|192304333|gb|FG996459.1|FG996459
EST:     TAACTGAACCCTAATTTCTTCTGGGAAACTCTATTTTCTCTAATATGGAG                         CAATACTGGTCTGGGAGTGCCATCAATGAAAACAAAGGAATGGCAGATAAT
genomic: TAACTGAACCCTAATTTCTTCTGGGAAACTCTATTTTCTCTAATATGGAGgtaacccctt ... aaaaatacagCAATACTGGTCTGGGAGTGCCATCAATGAAAACAAAGGAATGGTAGATAAT
EST: gi|151405371|gb|EV275185.1|EV275185
EST:     TAACTGAACCCTAATTTCTTCTGGGAAACTCTATTTTCTCTAATATGGAG                         CAATACTGGTCTGGGAGTGCCATCAATGAAAACAAAGGAATGGTAGATAAT
genomic: TAACTGAACCCTAATTTCTTCTGGGAAACTCTATTTTCTCTAATATGGAGgtaacccctt ... aaaaatacagCAATACTGGTCTGGGAGTGCCATCAATGAAAACAAAGGAATGGTAGATAAT
EST: gi|151401850|gb|EV271663.1|EV271663
EST:     TAACTGAACCCTAATTTCTTCTGGGAAACTCTATTTTCTCTAATATGGAG                         CAATACTGGTCTGGGAGTGCCATCAATGAAAACAAAGGAATGGTAGATAAT
genomic: TAACTGAACCCTAATTTCTTCTGGGAAACTCTATTTTCTCTAATATGGAGgtaacccctt ... aaaaatacagCAATACTGGTCTGGGAGTGCCATCAATGAAAACAAAGGAATGGTAGATAAT
EST: gi|15813132|gb|BI785407.1|BI785407
EST:     TAACTGAACCCTAATTTCTTCTGGGAAACTCTATTTTCTCTAATATGGAT                         TTTTACTGGTCTGGGAGTGCCATCAATGAAAACAAAGGAATGGTAGATAAT
genomic: TAACTGAACCCTAATTTCTTCTGGGAAACTCTATTTTCTCTAATATGGAGgtaacccctt ... aaaaatacagCAATACTGGTCTGGGAGTGCCATCAATGAAAACAAAGGAATGGTAGATAAT
EST: gi|151395357|gb|EV265228.1|EV265228
EST:     TAACTGAACCCTAATTTCTTCTGGGAAACTCTATTTTCTCTAATATGGAG                         CAATACTGGTCTGGGAGTGCCATCAATGAAAACAAAGGAATGGTAGATAAT
genomic: TAACTGAACCCTAATTTCTTCTGGGAAACTCTATTTTCTCTAATATGGAGgtaacccctt ... aaaaatacagCAATACTGGTCTGGGAGTGCCATCAATGAAAACAAAGGAATGGTAGATAAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACCTCTTCCATTTTATACACCAGTATCGCTCTGTATTTGTCTCATCCTCCTAACTGAACCCTAATTTCTTCTGGGAAACTCTATTTTCTCTAATATGGAGgtaacccctttctctttcttcattctttatcactgccaccgatcgcgatctatagttgttcaccgacggaaacacctcccttatctcttgctccctcatt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccctc