1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GGCCACCACGCCGCCGCCGCTCAAGAACAAGGCGGTGCGCCTGATCGCCGCCAAGTCCACGCTGCTGGCGCGCAAGGACGCGTACGGGGAAGACCCCTCGgtgagcgaggcgccggggcggcgggtgtgcagcagcggggcgcggcgggacgggggtgacggggacggggaaggggacagggaagaggacaggggagggg...
species | Chlamydomonas reinhardtii |
transcript | EDP06349 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CCAAGTCCACGCTGCTGGCGCGCAAGGACGCGTACGGGGAAGACCCCTCG GGCGCCTACGGCGCGGGCATGCATGCGGAGGTGGTGCGCAAGATTGAGAAGEST: gi|15696690|gb|BI720995.1|BI720995
genomic: CCAAGTCCACGCTGCTGGCGCGCAAGGACGCGTACGGGGAAGACCCCTCGgtgagcgagg ... gtgactgcagGGCGCCTACGGCGCGGGCATGCATGCGGAGGTGGTGCGCAAGATTGAGAAG
EST: CAAGTCCACGCTGCTGGCGCGCAAGGACGCGTACGGGGNAA-ACCCCTCG GGCGCCTACGGCGCGGGCATGCATGCGGAGGTGGTGCGCEST: gi|15696918|gb|BI721223.1|BI721223
genomic: CAAGTCCACGCTGCTGGCGCGCAAGGACGCGTACGGGG-AAGACCCCTCGgtgagcgagg ... gtgactgcagGGCGCCTACGGCGCGGGCATGCATGCGGAGGTGGTGCGC
EST: CCAAGTCCACGCTGCTGGCGCGCAAGGACGCGTACGGGGAAGACCCCTCG GGCGCCTACGGCGCGGGCATGCATGCGGAGGTGGTGCGCAAGATTGAGAAG
genomic: CCAAGTCCACGCTGCTGGCGCGCAAGGACGCGTACGGGGAAGACCCCTCGgtgagcgagg ... gtgactgcagGGCGCCTACGGCGCGGGCATGCATGCGGAGGTGGTGCGCAAGATTGAGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCCACCACGCCGCCGCCGCTCAAGAACAAGGCGGTGCGCCTGATCGCCGCCAAGTCCACGCTGCTGGCGCGCAAGGACGCGTACGGGGAAGACCCCTCGgtgagcgaggcgccggggcggcgggtgtgcagcagcggggcgcggcgggacgggggtgacggggacggggaaggggacagggaagaggacaggggagggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgcag