1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CGGAGTGGCGCGAGGAGGGCAAGGCGGAGATCGTGCCGGGCGTTCTTTTCATCGACGAGGTGCACATGCTGGACATCGAGTGCTTCTCGTTCCTCAACAGgtgcgcggcaggggcagtgcgggaatggagggagggagcggttgccggggcgcgaggggtgggatggccattcgatgacggggctgaggagggtttgaag...
species | Chlamydomonas reinhardtii |
transcript | EDP05775 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ATCGACGAGGTGCACATGCTGGACATCGAGTGCTTCTCGTTCCTCAACAG GGCGCTGGAGAATGATATGGCGCCCATCCTGGTGACCGCCACCAACCGCGGEST: gi|10780641|gb|AV637321.1|AV637321
genomic: ATCGACGAGGTGCACATGCTGGACATCGAGTGCTTCTCGTTCCTCAACAGgtgcgcggca ... gttgctgcagGGCGCTGGAGAATGATATGGCGCCCATCCTGGTGACCGCCACCAACCGCGG
EST: ATCGACGAGGTGCACATGCTGGACATCGAGTGCTTCTCGTTCCTCAACAG GGCGCTGGAGAATGATATGGCGCCCATCCTGGTGACCGCCACCAACCGCGG
genomic: ATCGACGAGGTGCACATGCTGGACATCGAGTGCTTCTCGTTCCTCAACAGgtgcgcggca ... gttgctgcagGGCGCTGGAGAATGATATGGCGCCCATCCTGGTGACCGCCACCAACCGCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGAGTGGCGCGAGGAGGGCAAGGCGGAGATCGTGCCGGGCGTTCTTTTCATCGACGAGGTGCACATGCTGGACATCGAGTGCTTCTCGTTCCTCAACAGgtgcgcggcaggggcagtgcgggaatggagggagggagcggttgccggggcgcgaggggtgggatggccattcgatgacggggctgaggagggtttgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgggatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggtttg