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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCGGGCCGCCAGACGTACGTGATCGACGTGAACGGCAAGTGCGTCATGGCCTTCAACGACCAGCTCAACGTGGAGCAGCACGTGGACGAGGCGCTCAAGgtgggcgtgggcatgtgtgtatgtgtgtggctgtgcgtgtgcgtgggtgtgtgtttgtgtgtggctgtgtgtttgcgtgttagggaaatgcaaattgcga...

Basic information

species Chlamydomonas reinhardtii
transcript EDP06371
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15700761|gb|BI725066.1|BI725066
EST:     CCTTCAACGACCAGCTCAACGTGGAGCAGCACGTGGACGAGGCGCTCAAG                         GTCCTGGCTTCCGTCAAGGTGGCCGCCTAAGCGTGGTGA
genomic: CCTTCAACGACCAGCTCAACGTGGAGCAGCACGTGGACGAGGCGCTCAAGgtgggcgtgg ... ctgccctcagGTCCTGGCTTCCGTCAAGGTGGCCGCCTAAGCGTGGTGA
EST: gi|16432183|gb|BI997409.1|BI997409
EST:     CCTTCAACGACCAGCTCAACGTGGAGCAGCACGTGGACGAGGCGCTCAAG                         GTCCTGGCTTCCGTCAAGGTGGCCGCCTAAGCGTGGTGACACGGCGCAGGA
genomic: CCTTCAACGACCAGCTCAACGTGGAGCAGCACGTGGACGAGGCGCTCAAGgtgggcgtgg ... ctgccctcagGTCCTGGCTTCCGTCAAGGTGGCCGCCTAAGCGTGGTGACACGGCGCAGGA
EST: gi|15371917|gb|BI531343.1|BI531343
EST:     CCTTCAACGACCAGCTCAACGTGGAGCAGCACGTGGACGAGGCGCTCAAG                         GTCCTGGCTTCCGTCAAGGTGGCCGCCTAAGCGTGGTGACACGGCGCAGGA
genomic: CCTTCAACGACCAGCTCAACGTGGAGCAGCACGTGGACGAGGCGCTCAAGgtgggcgtgg ... ctgccctcagGTCCTGGCTTCCGTCAAGGTGGCCGCCTAAGCGTGGTGACACGGCGCAGGA
EST: gi|16434424|gb|BI999650.1|BI999650
EST:     CCTTCAACGACCAGCTCAACGTGGAGCAGCACGTGGACGAGGCGCTCAAG                         GTCCTGGCTTCCGTCAAGGTGGCCGCCTAAGCGTGGTGACACGGCGCAGGA
genomic: CCTTCAACGACCAGCTCAACGTGGAGCAGCACGTGGACGAGGCGCTCAAGgtgggcgtgg ... ctgccctcagGTCCTGGCTTCCGTCAAGGTGGCCGCCTAAGCGTGGTGACACGGCGCAGGA
EST: gi|14224948|gb|BG843764.1|BG843764
EST:     CCTTCAACGACCAGCTCAACGTGGAGCAGCACGTGGACGAGGCGCTCAAG                         GTCCTGGCTTCCGTCAAGGTGGCCGCCTAAGCGTGGTGACACGGCGCAGGA
genomic: CCTTCAACGACCAGCTCAACGTGGAGCAGCACGTGGACGAGGCGCTCAAGgtgggcgtgg ... ctgccctcagGTCCTGGCTTCCGTCAAGGTGGCCGCCTAAGCGTGGTGACACGGCGCAGGA
EST: gi|16432184|gb|BI997410.1|BI997410
EST:     CCTTCAACGACCAGCTCAACGTGGAGCAGCACGTGGACGAGGCGCTCAAG                         GTCCTGGCTTCCGTCAAGGTGGCCGCCTAAGCGTGGTGACACGGCGCAGGA
genomic: CCTTCAACGACCAGCTCAACGTGGAGCAGCACGTGGACGAGGCGCTCAAGgtgggcgtgg ... ctgccctcagGTCCTGGCTTCCGTCAAGGTGGCCGCCTAAGCGTGGTGACACGGCGCAGGA
EST: gi|15700760|gb|BI725065.1|BI725065
EST:     CCTTCAACGACCAGCTCAACGTGGAGCAGCACGTGGACGAGGCGCTCAAG                         GTCCTGGCTTCCGTCAAGGTGGCCGCCTAAGCGTGGTGACACGGCGCAGGA
genomic: CCTTCAACGACCAGCTCAACGTGGAGCAGCACGTGGACGAGGCGCTCAAGgtgggcgtgg ... ctgccctcagGTCCTGGCTTCCGTCAAGGTGGCCGCCTAAGCGTGGTGACACGGCGCAGGA
EST: gi|12251766|gb|BF861629.1|BF861629
EST:     CCTTCAACGACCAGCTCAACGTGGAGCAGCACGTGGACGAGGCGCTCAAG                         GTCCTGGCTTCCGTCAAGGTGGCCGCCTAAGCGTGGTGACACGGCGCAGGA
genomic: CCTTCAACGACCAGCTCAACGTGGAGCAGCACGTGGACGAGGCGCTCAAGgtgggcgtgg ... ctgccctcagGTCCTGGCTTCCGTCAAGGTGGCCGCCTAAGCGTGGTGACACGGCGCAGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCCGGGCCGCCAGACGTACGTGATCGACGTGAACGGCAAGTGCGTCATGGCCTTCAACGACCAGCTCAACGTGGAGCAGCACGTGGACGAGGCGCTCAAGgtgggcgtgggcatgtgtgtatgtgtgtggctgtgcgtgtgcgtgggtgtgtgtttgtgtgtggctgtgtgtttgcgtgttagggaaatgcaaattgcga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgtgt
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgggtg
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcgtgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgcaaa