1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTGGGTGGAGCAGGAGGAGCGCGTCAGTGGTGACCCCGTGGCCCACCAGGAGTTTCTCAAGgtaggtgcggagttgtgcctgtggtggtcattgtggtggaaagtgcgaggcaggcgcaggtgggccgtggttaccgtacgaggcttccccaccctcggaa...
species | Chlamydomonas reinhardtii |
transcript | EDO96349 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGGAGGAGCGCGTCAGTGGTGACCCCGTGGCCCACCAGGAGTTTCTCAAG TACTTTCGGGAGATGTGGGGCGCGAGTGTGTTGGGGCGTCTGGACCTGAGCEST: gi|49459108|gb|BP087021.1|BP087021
genomic: AGGAGGAGCGCGTCAGTGGTGACCCCGTGGCCCACCAGGAGTTTCTCAAGgtaggtgcgg ... cccgccgcagTACTTTCGGGAGATGTGGGGCGCGAGTGTGTTGGGGCGTCTGGACCTGAGC
EST: AGGAGGAGCGCGTCAGTGGTGACCCCGTGGCCCACCAGGAGTTTCTCAAG TACTTTCGGGAGATGTGGGGCGCGAGTGTGTTGGGGCGTCTGGACCTGAGCEST: gi|23367255|gb|BU655074.1|BU655074
genomic: AGGAGGAGCGCGTCAGTGGTGACCCCGTGGCCCACCAGGAGTTTCTCAAGgtaggtgcgg ... cccgccgcagTACTTTCGGGAGATGTGGGGCGCGAGTGTGTTGGGGCGTCTGGACCTGAGC
EST: AGGAGGAGCGCGTCAGTGGTGACCCCGTGGCCCACCAGGAGTTTCTCAAG TACTTTCNGGAGATGTGGGGCGCGAGTGTGTTGGGGCGTCTGGACCTGAGC
genomic: AGGAGGAGCGCGTCAGTGGTGACCCCGTGGCCCACCAGGAGTTTCTCAAGgtaggtgcgg ... cccgccgcagTACTTTCGGGAGATGTGGGGCGCGAGTGTGTTGGGGCGTCTGGACCTGAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGGTGGAGCAGGAGGAGCGCGTCAGTGGTGACCCCGTGGCCCACCAGGAGTTTCTCAAGgtaggtgcggagttgtgcctgtggtggtcattgtggtggaaagtgcgaggcaggcgcaggtgggccgtggttaccgtacgaggcttccccaccctcggaa
- - - - - - GGAGGA
- - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcattgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgtggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccacc