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GTTCTGCAAATACCCTCAGGAGATCGTCCTGCGCTTGGAGCAGACGTGCAAAGTGCAGCAGATTCAGATTTTGGCGCATGAGTATAAGgtacatgtgccggagcaggggagggggggggcggggacacgccgggccgttgccccaggatgcgcagctgcagggcttctatagcggcagcaagccacgg...
species | Chlamydomonas reinhardtii |
transcript | EDP06459 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGCAGACGTGCAAAGTGCAGCAGATTCAGATTTTGGCGCATGAGTATAAG ATTGCGACACGGGTGGAGGTGTTCGTGGGCGCACCCCAGAACCCGCTCGACEST: gi|6548195|gb|AV393979.1|AV393979
genomic: AGCAGACGTGCAAAGTGCAGCAGATTCAGATTTTGGCGCATGAGTATAAGgtacatgtgc ... cgccttccagATTGCGACACGGGTGGAGGTGTTCGTGGGCGCACCCCAGAACCCGCTCGAC
EST: AGCAGACGTGCAAAGTGCAGCAGATTCAGATTTTGGCGCATGAGTATAAG ATGGCGACACGGGTGGAGGTGTTCGTGGGCGCACCCCAGAACCCGCTCGACEST: gi|10790751|gb|AV628117.1|AV628117
genomic: AGCAGACGTGCAAAGTGCAGCAGATTCAGATTTTGGCGCATGAGTATAAGgtacatgtgc ... cgccttccagATTGCGACACGGGTGGAGGTGTTCGTGGGCGCACCCCAGAACCCGCTCGAC
EST: AGCAGACGTGCGAAGTGCAGCAGATTCACATTTTGGCGCATGAGTATAAG ATTGCGACACGGGTGGAGGTGTTCGTGGGCGCACCCCAGAACCCGCTCGACEST: gi|6548498|gb|AV394282.1|AV394282
genomic: AGCAGACGTGCAAAGTGCAGCAGATTCAGATTTTGGCGCATGAGTATAAGgtacatgtgc ... cgccttccagATTGCGACACGGGTGGAGGTGTTCGTGGGCGCACCCCAGAACCCGCTCGAC
EST: AGCAGACGTGCAAAGTGCAGCAGATTCAGATTTTGGCGCATGAGTATAAG ATTGCGACACGGGTGGAGGTGTTCGTGGGCGCACCCCAGAACCCGCTCGACEST: gi|10791902|gb|AV629268.1|AV629268
genomic: AGCAGACGTGCAAAGTGCAGCAGATTCAGATTTTGGCGCATGAGTATAAGgtacatgtgc ... cgccttccagATTGCGACACGGGTGGAGGTGTTCGTGGGCGCACCCCAGAACCCGCTCGAC
EST: AGCAGACGTGCAAAGTGCAGCAGATTCAGATTTTGGCGCATGAGTATAAG ATTGCGACACGGGTGGAGGTGTTCGTGGGCGCACCCCAGAACCCGCTCGACEST: gi|10790650|gb|AV628016.1|AV628016
genomic: AGCAGACGTGCAAAGTGCAGCAGATTCAGATTTTGGCGCATGAGTATAAGgtacatgtgc ... cgccttccagATTGCGACACGGGTGGAGGTGTTCGTGGGCGCACCCCAGAACCCGCTCGAC
EST: AGCAGACGTGCAAAGTGCAGCAGATTCAGATTTTGGCGCATGAGTATAAG ATTGCGACACGGGTGGAGGTGTTCGTGGGCGCACCCCAGAACCCGCTCGACEST: gi|49466688|gb|BP094601.1|BP094601
genomic: AGCAGACGTGCAAAGTGCAGCAGATTCAGATTTTGGCGCATGAGTATAAGgtacatgtgc ... cgccttccagATTGCGACACGGGTGGAGGTGTTCGTGGGCGCACCCCAGAACCCGCTCGAC
EST: AGCAGACGTGCAAAGTGCAACAGATTCAGATTTTGGCGCATGAGTATAAG ATTGCGACACGGGTGGAGGTGTTCGTGGGCGCACCCCAGAACCCGCTCGAC
genomic: AGCAGACGTGCAAAGTGCAGCAGATTCAGATTTTGGCGCATGAGTATAAGgtacatgtgc ... cgccttccagATTGCGACACGGGTGGAGGTGTTCGTGGGCGCACCCCAGAACCCGCTCGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCTGCAAATACCCTCAGGAGATCGTCCTGCGCTTGGAGCAGACGTGCAAAGTGCAGCAGATTCAGATTTTGGCGCATGAGTATAAGgtacatgtgccggagcaggggagggggggggcggggacacgccgggccgttgccccaggatgcgcagctgcagggcttctatagcggcagcaagccacgg
- - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acacgcc