1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGCACGGAGTTTCCGGACTACCCGTACCCCTTCGAGCTGACAACGCGTGTGGAGCTGTGCGACGACAACCTGGAGCAGACCCTCACGGTCAAGAACACGGgtgggtgggtgcgtgggagggcggatctgggcggatcgggtagcgctgtggcgctgtggcggactggttgtgcaggccttactaagtgcagcattgtagc...
species | Chlamydomonas reinhardtii |
transcript | EDP03922 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGAGCTGTGCGACGACAACCTGGAGCAGACCCTCACGGTCAAGAACACGG GCTCCGCGCCCATGCCCTTCACCGCCGCGCTGCACACCTACTACACCGTCAEST: gi|23366171|gb|BU653991.1|BU653991
genomic: GGAGCTGTGCGACGACAACCTGGAGCAGACCCTCACGGTCAAGAACACGGgtgggtgggt ... cactctgcagGCTCCGCGCCCATGCCCTTCACCGCCGCGCTGCACACCTACTACACCGTCA
EST: GGAGCTGTGCGACGACAACCTGGAGCAGACCCTCACGGTCAAGAACACGG GCTCCGCGCCCATGCCCTTCACCGCCGCGCTGCACACCTACTACACCGTCAEST: gi|6543565|gb|AV389349.1|AV389349
genomic: GGAGCTGTGCGACGACAACCTGGAGCAGACCCTCACGGTCAAGAACACGGgtgggtgggt ... cactctgcagGCTCCGCGCCCATGCCCTTCACCGCCGCGCTGCACACCTACTACACCGTCA
EST: GGAGCTGTGCGACGACAACCTGGAGCAGACCCTCACGGTCAAGAACACGG GCTCCGCGCCCATGCCCTTCACCGCCGCGCTGCACACCTACTACACCGTCAEST: gi|8828091|gb|BE211933.1|BE211933
genomic: GGAGCTGTGCGACGACAACCTGGAGCAGACCCTCACGGTCAAGAACACGGgtgggtgggt ... cactctgcagGCTCCGCGCCCATGCCCTTCACCGCCGCGCTGCACACCTACTACACCGTCA
EST: GGAGCTGTGCGACGACAACCTGGAGCAGACCCTCACGGTCAAGAACACGG GCTCCGCGCCCATGCCCTTCACCGCCGCGCTGCACACCTACTACACCGTCA
genomic: GGAGCTGTGCGACGACAACCTGGAGCAGACCCTCACGGTCAAGAACACGGgtgggtgggt ... cactctgcagGCTCCGCGCCCATGCCCTTCACCGCCGCGCTGCACACCTACTACACCGTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCACGGAGTTTCCGGACTACCCGTACCCCTTCGAGCTGACAACGCGTGTGGAGCTGTGCGACGACAACCTGGAGCAGACCCTCACGGTCAAGAACACGGgtgggtgggtgcgtgggagggcggatctgggcggatcgggtagcgctgtggcgctgtggcggactggttgtgcaggccttactaagtgcagcattgtagc
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atctggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taagtgc