1 5' 3' | 2 5' 3' |
GCCCCATGCACATCAAGGACCGCAAGTTGTGGCGCGCCCGGGCGGAGGCTCTGGCCAAGGAGAAGAAGCTCATCCGCGTGCAGgtgcggcagcgggcggcagggggccaggccacatgccggcatgtggtgacggcatgtggtgactacctataagtacactcttttcagcctgttgcagctg...
species | Chlamydomonas reinhardtii |
transcript | EDP06549 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCGCCCGGGCGGAGGCTCTGGCCAAGGAGAAGAAGCTCATCCGCGTGCAG GTGGGTCAGCTGGGCATCACGCCGGCCTTCCTGCGCGCCACGTCCGACGTGEST: gi|14237032|gb|BG855848.1|BG855848
genomic: GCGCCCGGGCGGAGGCTCTGGCCAAGGAGAAGAAGCTCATCCGCGTGCAGgtgcggcagc ... gcccgcacagGTGGGTCAGCTGGGCATCACGCCGGCCTTCCTGCGCGCCACGTCCGACGTG
EST: GCGCCCGGGCGGAGGCTCTGGCCAAGGAGAAGAAGCTCATCCGCGTGCAG GTGGGTCAGCTGGGCATCACGCCGGCCTTCCTGCGCGCCACGTCCGACGTGEST: gi|6541570|gb|AV387354.1|AV387354
genomic: GCGCCCGGGCGGAGGCTCTGGCCAAGGAGAAGAAGCTCATCCGCGTGCAGgtgcggcagc ... gcccgcacagGTGGGTCAGCTGGGCATCACGCCGGCCTTCCTGCGCGCCACGTCCGACGTG
EST: GCGCCCGGGCGGAGGCTCTGGCCAAGGAGAAGAAGCTCATCCGCGTGCAG GTGGGTCAGCTGGGCATCACGCCGGCCTTCCTGCGCGCCACGTCCGACGTG
genomic: GCGCCCGGGCGGAGGCTCTGGCCAAGGAGAAGAAGCTCATCCGCGTGCAGgtgcggcagc ... gcccgcacagGTGGGTCAGCTGGGCATCACGCCGGCCTTCCTGCGCGCCACGTCCGACGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCCCATGCACATCAAGGACCGCAAGTTGTGGCGCGCCCGGGCGGAGGCTCTGGCCAAGGAGAAGAAGCTCATCCGCGTGCAGgtgcggcagcgggcggcagggggccaggccacatgccggcatgtggtgacggcatgtggtgactacctataagtacactcttttcagcctgttgcagctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tataagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agcctgt