1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ACTTCCTGAGCTTTGTTTGCGATGAGCTGGACGGGAGATTCGCGCGAATGTTCAACCAGACCTCCACGTTTGGCGCGGTGCTGGACATGGTCACAGACAGgtgcgggtttagccggccccgccgcgcccggagactttgctggtcggagccccaagcacgcccacgtgctgtatcatccctgttgataactgtcatggac...
species | Chlamydomonas reinhardtii |
transcript | EDP06395 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTCAACCAGACCTCCACGTTTGGCGCGGTGCTGGACATGGTCACAGACAG GCTTGCCACCACGGGCCTACTGCTGCTGTTGTGCATGTTGTACCCTGCCATEST: gi|15692851|gb|BI717156.1|BI717156
genomic: TTCAACCAGACCTCCACGTTTGGCGCGGTGCTGGACATGGTCACAGACAGgtgcgggttt ... ctgcccgcagGCTTGCCACCACGGGCCTACTGCTGCTGTTGTGCATGGTGTACCCTGCCAT
EST: TTCAACCAGACCTCCACGTTTGGCGCGGTGCTGGACATGGTCACAGACAG GCTTGCCACCACGGGCCTACTGCTGCTGTTGTGCATGGTGTACCCTGCCATEST: gi|15692229|gb|BI716534.1|BI716534
genomic: TTCAACCAGACCTCCACGTTTGGCGCGGTGCTGGACATGGTCACAGACAGgtgcgggttt ... ctgcccgcagGCTTGCCACCACGGGCCTACTGCTGCTGTTGTGCATGGTGTACCCTGCCAT
EST: TTCAACCAGACCTTCACGTTTGGCGCGGTGCTGGACATGGTCACAGACAG GCTTGCCACCACGGGCCTACTGCTGCTGTTGTGCATGGTGTACCCTGCCAT
genomic: TTCAACCAGACCTCCACGTTTGGCGCGGTGCTGGACATGGTCACAGACAGgtgcgggttt ... ctgcccgcagGCTTGCCACCACGGGCCTACTGCTGCTGTTGTGCATGGTGTACCCTGCCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTTCCTGAGCTTTGTTTGCGATGAGCTGGACGGGAGATTCGCGCGAATGTTCAACCAGACCTCCACGTTTGGCGCGGTGCTGGACATGGTCACAGACAGgtgcgggtttagccggccccgccgcgcccggagactttgctggtcggagccccaagcacgcccacgtgctgtatcatccctgttgataactgtcatggac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caagcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tccctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taactgt