1 5' 3' | 2 5' 3' |
GAGAAGTGGAAGAATATTGGAGCAGGGAAGAGCTCTGCTGAGAAGGGCATTGCCATCACAATCGGCGTAATCATGCTGGTCGGCATGCTCACCTGCCTAGgtaaggcgcttctggatgctatcacgtgtgatggcaggtttggggacggaggggaagggcgggcatgggcatattgataggggttggtgacgaaaatgca...
species | Chlamydomonas reinhardtii |
transcript | EDP04558 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGCCATCACAATTGGCGTGATCATGCTGGTCGGCATGCTCACCTGCCTAG TGTGCTGCGTCTTCCGCCGTGGCGGCCAGTGGCGCGTCCCGGGGCTGCAGTEST: gi|14231896|gb|BG850712.1|BG850712
genomic: TGCCATCACAATCGGCGTAATCATGCTGGTCGGCATGCTCACCTGCCTAGgtaaggcgct ... caccccgcagTGTGCTGCGTCTTCCGCCGTGGCGGCCAGTGGCGCGTCCCGGGGCTGCAGT
EST: TGCCATCACAATCGGCGTAATCATGCTGGTCGGCATGCTCACCTGCCTAG TGTGCTGCGTCTTCCGCCGTGGCGGCCAGTGGCGCGTCCCGGGGCTGCAGTEST: gi|22062578|gb|BQ814855.1|BQ814855
genomic: TGCCATCACAATCGGCGTAATCATGCTGGTCGGCATGCTCACCTGCCTAGgtaaggcgct ... caccccgcagTGTGCTGCGTCTTCCGCCGTGGCGGCCAGTGGCGCGTCCCGGGGCTGCAGT
EST: CACAATCGGCGTAATCATGCTGGTCGGCATGCTCACCTGCCTAG TGTGCTGCGTCTTCCGCCGTGGCGGCCAGTGGCGCGTCCCGGGGCTGCAGTEST: gi|16437914|gb|BM003134.1|BM003134
genomic: CACAATCGGCGTAATCATGCTGGTCGGCATGCTCACCTGCCTAGgtaaggcgct ... caccccgcagTGTGCTGCGTCTTCCGCCGTGGCGGCCAGTGGCGCGTCCCGGGGCTGCAGT
EST: CTCACCTGCCTAG TGTGCTGCGTCTTCCGCCGTGGCGGCCAGTGGCGCGTCCCGGGGCTGCAGT
genomic: CTCACCTGCCTAGgtaaggcgct ... caccccgcagTGTGCTGCGTCTTCCGCCGTGGCGGCCAGTGGCGCGTCCCGGGGCTGCAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGAAGTGGAAGAATATTGGAGCAGGGAAGAGCTCTGCTGAGAAGGGCATTGCCATCACAATCGGCGTAATCATGCTGGTCGGCATGCTCACCTGCCTAGgtaaggcgcttctggatgctatcacgtgtgatggcaggtttggggacggaggggaagggcgggcatgggcatattgataggggttggtgacgaaaatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctggat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtttggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgggcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttggtga