1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GGCTACTTCTCAGCTGCTGTTGTAAAATATGCAAGAAACCGACCAGACAAGATCAAGAATCTCATACTCTTGAATCCTCCTgtaagaaaggaaccttaaacataaccaacctactactttcttctctttgttaaaactaacttagaacttatatatacggtttcag
species | Arabidopsis thaliana |
transcript | AT4G12830.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CAAGAAACCGACCAGACAAGATCAAGAATCTCATACTCTTGAATCCTCCT AEST: gi|125101450|gb|EL156560.1|EL156560
genomic: CAAGAAACCGACCAGACAAGATCAAGAATCTCATACTCTTGAATCCTCCTgtaagaaagg ... acggtttcag-
EST: CAAGAAACCGACCAGACAAGATCAAGAATCTCATACTCTTGAATCCTCCT AEST: gi|124958889|gb|EL033601.1|EL033601
genomic: CAAGAAACCGACCAGACAAGATCAAGAATCTCATACTCTTGAATCCTCCTgtaagaaagg ... acggtttcag-
EST: ATACTCTTGAATCCTCCT CTCACACCAGAACATGCTAAACTTCCATCAACATTGTCTGTATTCAGCAACEST: gi|124990983|gb|EL063252.1|EL063252
genomic: ATACTCTTGAATCCTCCTgtaagaaagg ... acggtttcagCTCACACCAGAACATGCTAAACTTCCATCAACATTGTCTGTATTCAGCAAC
EST: CAAGAAACCGACCAGACAAGATCAAGAATCTCATACTCTTGAATCCTCCT CTCACACCAGAACATGCTAAACTTCCATCAACATTGT
genomic: CAAGAAACCGACCAGACAAGATCAAGAATCTCATACTCTTGAATCCTCCTgtaagaaagg ... acggtttcagCTCACACCAGAACATGCTAAACTTCCATCAACATTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCTACTTCTCAGCTGCTGTTGTAAAATATGCAAGAAACCGACCAGACAAGATCAAGAATCTCATACTCTTGAATCCTCCTgtaagaaaggaaccttaaacataaccaacctactactttcttctctttgttaaaactaacttagaacttatatatacggtttcag
- - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - AGATCA