Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGATATATGGCTCCAGAGGTTTATAGGAATGAAGAGTATGATACAAAAGTAGATGTATTCTCTTTCGCTTTAATCTTACAAGAGgtaaagtaatcgagagagctattaagtttttctattcatagagtaaaaatcctccggcttaaacaatttataaacagaatgttgttttgtgggttaacagaatgttgttttgtgggttaacaaaacctaacag

Basic information

species Arabidopsis thaliana
transcript AT3G58760.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G58760.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GRMZM2G045366_T01 (Zea mays), 5'ss of exon 9
GGCGATATATGGCTCCAGAGGTTTATAGGAATGAAGAGTATGATACAAAAGTAGATGTATTCTCTTTCGCTTTAATCTTACAAGAGgtaaa--gtaatcgagagagctattaagtttttctattcatagagtaaaaatcctccggcttaaacaatttataaacagaatgttgttttgtgggttaacagaatgttgttttgtgggttaacaaaacctaacag
|   |||| |||||||||| ||     | ||||||||||||||||| ||||| ||||| ||||| |||||| | ||  | || |||||||   || ||  |  |     ||  |  | ||| |    | |   ||  |  |  ||   |     | | |   |  ||| ||  |      |  |||| |   |                            
GTAAATATGTGGCTCCAGAAGTCCTGCGAAATGAAGAGTATGATACCAAAGTGGATGTCTTCTCATTCGCTCTGATACTTCAGGAGgtaagttgtgatatattgtaaatttgggcatctctgtctccacacagaaggttttatggtgcatttc-tgtgttctctaaatatttct------gccaacatatctt----------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124795454|gb|EH885133.1|EH885133
EST:     AGTATGATACAAAAGTAGATGTATTCTCTTTCGCTTTAATCTTACAAGAG                         ATGATAGAAGGTTGTGAACCATTTCA
genomic: AGTATGATACAAAAGTAGATGTATTCTCTTTCGCTTTAATCTTACAAGAGgtaaagtaat ... aacctaacagATGATAGAAGGTTGTGAACCATTTCA