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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACATCTGAAAGTTGCAGACTTTGGAGTCAGCAAGCTGCTGGTAGTTAAGAAGACAGTTAAAAAAGACAGACCTGTTGTTACATGCTTGGACAGTTCATgtaagtttctttaatctgacgatcttaaaaattcctctgtgaagttgtgtatgttcttgtcttgagctagcttagagctgttagctttaatgttttattgtctaaagctaaactacaaccaatctaatggttattttggaagggtctatgctgatgttactctcttttttcgttctggctaagcag

Basic information

species Arabidopsis thaliana
transcript AT3G58760.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G58760.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA14G03040.1 (Glycine max), 5'ss of exon 8
---GGACATCTGAAAGTTGCAGACTTTGGAGTCAGCAAGCTGCTGGTAGTTAAGAAGACAGTTAAAAAAGACAGACCTGTTGTTACATGCTTGGACAGTTCATgtaagtttctttaatctgacgatcttaaaaattcctctgtgaagttgtgtatgttcttgtcttgagctagcttagagctgttagctttaatgttttattgtctaaagctaaactacaaccaatctaatggttattttggaagggtctatgctgatgttactctcttttttcgttctggctaagcag
   || |||||||||||||||||||||||||| |||||| ||||   ||||   || |  || ||| |||||| ||| || |   || || |||| |  ||||||||||||  ||  |  |  || | |   |||           |||||  ||  | |||   || |  |    |    ||| | |||| || |  |   | ||  |                                                                                
TCTGGGCATCTGAAAGTTGCAGACTTTGGAGTTAGCAAGTTGCTTAAAGTTGCTAAAATGGTCAAAGAAGACAAACCCGTGG---CAAGCCTGGATACATCATgtaagttttcttctttagtggagccttgtaatattc-------gttgtcaatcatgttggtctgcgtgaaagcaatattgtgaacttttatttcatgagggctgtaa-------------------------------------------------------------------------------

upper sequence: AT3G58760.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA02G45770.1 (Glycine max), 5'ss of exon 8
---GGACATCTGAAAGTTGCAGACTTTGGAGTCAGCAAGCTGCTGGTAGTTAAGAAGACAGTTAAAAAAGACAGACCTGTTGTTACATGCTTGGACAGTTCATgtaagtttctttaatctgacgat-cttaaaaattcctctgtgaagttgtgtatgttcttgtcttgagctagcttagagctgttagctttaatgttttattgtctaaagctaaactacaaccaatctaatggttattttggaagggtctatgctgatgttactctcttttttcgttctggctaagcag
   || |||||||||||||||||||||||||| |||||| ||||   ||||   || ||||| ||| | |||| ||| ||    ||| || |||| |  ||||||| ||||  ||  |  |  ||  ||| |||  | |  ||| || |  ||| || |||       ||| |  ||       |    || |       ||| |                                                                                     
TCTGGGCATCTGAAAGTTGCAGACTTTGGAGTTAGCAAGTTGCTTAAAGTTGCTAAAACAGTCAAAGAGGACAAACCCGTG---ACAAGCCTGGATACATCATgtaggttttcttctttagtggaggcttgaaatattcattgtcaa-tcatgt-tggtctgcataaaagcaatattgtgaacttctatttcatgagggcattat-------------------------------------------------------------------------------------