1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTTTTCCCGCTTGTTCAGAACCAACAATTCGAGGAAGTAGCCAAAGTTATTTCCAAGGAACTCGCCTCTGTCGGTATCTCCCATAAGATTGACATCACTGgtacgtaaaaacaagttgagaattgaagttttttgaaatattgaaatggatcaaatcaagtaaagatttgttgtgtttgtgtgtgaacag
species | Arabidopsis thaliana |
transcript | AT1G29880.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TCCAAGGAACTCGCCTTCTGTCGGTATCTCCCATAAGATTGACATCACTG GTACATCGATAGGGAAGAGATATGCGAGAACCGAEST: gi|86078759|gb|DR374516.1|DR374516
genomic: TCCAAGGAACTCGCC-TCTGTCGGTATCTCCCATAAGATTGACATCACTGgtacgtaaaa ... gtgtgaacagGTACATCGATAGGGAAGAGATATGCGAGAACCGA
EST: TTCCAAGGAACTCGCCTCTGTCGGTATCTCCCATAAGATTGACATCACTG GTACATCGATAGGGAAGAGATATGCGAGAACCGATGAGCTTGGAGTGCCATEST: gi|164059037|gb|ES187664.1|ES187664
genomic: TTCCAAGGAACTCGCCTCTGTCGGTATCTCCCATAAGATTGACATCACTGgtacgtaaaa ... gtgtgaacagGTACATCGATAGGGAAGAGATATGCGAGAACCGATGAGCTTGGAGTGCCAT
EST: TTCCAAGGAACTCGCCTCTGTCGGTATCTCCCATAAGATTGACATCACTG GTACATCGATAGGGAAGAGATATGCGAGAACCGATGAGCTTGGAGTGEST: gi|86079183|gb|DR374940.1|DR374940
genomic: TTCCAAGGAACTCGCCTCTGTCGGTATCTCCCATAAGATTGACATCACTGgtacgtaaaa ... gtgtgaacagGTACATCGATAGGGAAGAGATATGCGAGAACCGATGAGCTTGGAGTG
EST: TTCCAAGGAACTCGCCTCTGTCGGTATCTCCCATAAGATTGACATCACTG GTACATCGATAGGGAAGAGATATGCGAGAACCGATGAGCTTGGAGTGCCATEST: gi|124843821|gb|EH928258.1|EH928258
genomic: TTCCAAGGAACTCGCCTCTGTCGGTATCTCCCATAAGATTGACATCACTGgtacgtaaaa ... gtgtgaacagGTACATCGATAGGGAAGAGATATGCGAGAACCGATGAGCTTGGAGTGCCAT
EST: AAGGAACTCGCCTCTGTCGGTATCTCCCANAAGATTGACATCACTG GTACATCGATAGGGAAGAGATATGCGAGAAEST: gi|164096063|gb|ES173999.1|ES173999
genomic: AAGGAACTCGCCTCTGTCGGTATCTCCCATAAGATTGACATCACTGgtacgtaaaa ... gtgtgaacagGTACATCGATAGGGAAGAGATATGCGAGAA
EST: TTCCAAGGAACTCGCCTCTGTCGGTATCTCCCATAAGATTGACATCACTG GTACTATCGATAGGGAAGAGATATGCGAGAACCGAT
genomic: TTCCAAGGAACTCGCCTCTGTCGGTATCTCCCATAAGATTGACATCACTGgtacgtaaaa ... gtgtgaacagGTAC-ATCGATAGGGAAGAGATATGCGAGAACCGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTTCCCGCTTGTTCAGAACCAACAATTCGAGGAAGTAGCCAAAGTTATTTCCAAGGAACTCGCCTCTGTCGGTATCTCCCATAAGATTGACATCACTGgtacgtaaaaacaagttgagaattgaagttttttgaaatattgaaatggatcaaatcaagtaaagatttgttgtgtttgtgtgtgaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA