1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GGATAACGCAGGGTTTCCTGCTGTGGTAACGGCTCATTTTGTACCCATTGAAGGACAACAACGTCCTCGAACTACTATTTTGATCAAGTTTGCTGATGAGgttaatgcctacattcatctcttttcctcatctagatttgtgggaaaaacttaattcttgacagttgttttacttctatgccgcacag
species | Arabidopsis thaliana |
transcript | AT5G58030.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AAGGACAACAACGTCCTCGAACTACTATTTTGATCAAGTTTGCTGATGAG GTGCTTAAGAGAGAGGCACGGCTAAGCCAATGAGAGTACTATGGTCACGAGEST: gi|164170220|gb|ES127157.1|ES127157
genomic: AAGGACAACAACGTCCTCGAACTACTATTTTGATCAAGTTTGCTGATGAGgttaatgcct ... tgccgcacagGTGCTTAAGAGAGAGGCACGGCTAAGCCAATGAGAGTACTATGGTCACGAG
EST: ATCAAGTTTGCTGATGAG GTGCTTAAGAGAGAGGCACGGCTAAGCCAATGAGAGTACTATGGTCEST: gi|19741160|gb|AU226513.1|AU226513
genomic: ATCAAGTTTGCTGATGAGgttaatgcct ... tgccgcacagGTGCTTAAGAGAGAGGCACGGCTAAGCCAATGAGAGTACTATGGTC
EST: AAGGACAACAACCTCCTCGAACTACTATTTTGATCAAGTTTGCTGATGAG GTGCTTAAGAGAGAGGCACGGCTAAGCCAATGAGAGTACTATGGTCACGAG
genomic: AAGGACAACAACGTCCTCGAACTACTATTTTGATCAAGTTTGCTGATGAGgttaatgcct ... tgccgcacagGTGCTTAAGAGAGAGGCACGGCTAAGCCAATGAGAGTACTATGGTCACGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATAACGCAGGGTTTCCTGCTGTGGTAACGGCTCATTTTGTACCCATTGAAGGACAACAACGTCCTCGAACTACTATTTTGATCAAGTTTGCTGATGAGgttaatgcctacattcatctcttttcctcatctagatttgtgggaaaaacttaattcttgacagttgttttacttctatgccgcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT