Sequence
atgc intronic sequence ATGC exonic sequenceGATGTTGAAGCTCACACCTCAGATGCATCACAATTAATTCCACAACACAATTACAAGCTTGATGTGCATGCTCTAAATAGCCGTCACCCAGGAGAGgtaaaattaattcgttctccattgattattgagcgaaatagttaacctttccttcgttctttcggaagagatttctattgcactatcataatttgaaagctttgctggactgaag
Basic information
species | Arabidopsis thaliana |
transcript | AT3G51050.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G51050.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os02g01070.1 (Oryza sativa), 5'ss of exon 5
GATGTTGAAGCTCACACCTCAGATGCATCACAATTAATTCCACAACACAATTACAAGCTTGATGTGCATGCTCTAAATAGCCGTCACCCAGGAGAGgt-aaaattaattcgttctccattgat-------tattgagcgaaatagttaacctttccttcgttctttcggaagagatttctattgcactatcataatttgaaagctttgctggactgaag
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AATATCCCATCGCAACCATCCGATGCTTCAGTGCTGATACCACAACACAATTACAAGCTTGATGCCCATGCCCTTAATAGTCGTCATCCTGGTCAGgtgagaattgtgcctagcactcttgataatggtatatttgccaacagaagtcacagttacatacttaaatctgagcaagtgt-tatgtttctgttgatatt----------------------
upper sequence: AT3G51050.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA11G07720.1 (Glycine max), 5'ss of exon 7
GATGTTGAAGCTCACACCTCAGATGCATCACAATTAATTCCACAACACAATTACAAGCTTGATGTGCATGCTCTAAATAGCCGTCACCCAGGAGAGgtaaaattaattcgttctccattgattattgagcgaaatagttaacctttccttcgttctttcggaagagatttctattgcactatcataatttgaaagctttgctggactgaag
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AACATTGAAGCACATTCTTCAGATGCATCACAGTTACTTCCACAGCATAACTACAAGCTTGATGTTCATGCTCTGAATACCCGTCAACCTGGAGAGgtacttacattttatcc----------attcaacaaaatcctatgggtatgctggattagt--gaaatgtgatggagtaatggtataaaaaattatttccttta-taacctaa--
upper sequence: AT3G51050.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA01G37580.1 (Glycine max), 5'ss of exon 7
GATGTTGAAGCTCACACCTCAGATGCATCACAATTAATTCCACAACACAATTACAAGCTTGATGTGCATGCTCTAAATAGCCGTCACCCAGGAGAGgtaaaattaattcg--ttctccattgattattgagcgaaatagttaacctttccttcgttctttcggaagagatttctattgcactatcataatttgaaagctttgctggactgaag
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AACATTGAAGTGCATTCTTCAGATGCATCACAGTTACTTCCGCAACATAACTACAAGCTTGATGTTCATGCTCTGAATACCCGCCAACCTGGAGAGgtacttacattttagctgttcaactaaatcctatg-ggtatgctgga---ttagtgaaatgtgatggaataatggtgtaaagaattattacc-ttcataacctct------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86060085|gb|DR355842.1|DR355842EST: CAATTACAAGCTTGATGTGCATGCTCTAAATAGCCGTCACCCAGGAAGAG TTTGAGTGCAGGGAATTTAGAGAATCAAATTCTTGGTGTCATGCCCCATC
genomic: CAATTACAAGCTTGATGTGCATGCTCTAAATAGCCGTCACCCAGGA-GAGgtaaaattaa ... tggactgaagTTTGAGTGCAGGGAATTTAGAGAATCAA-TTCTTAGTGTCATGCCCCATC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATGTTGAAGCTCACACCTCAGATGCATCACAATTAATTCCACAACACAATTACAAGCTTGATGTGCATGCTCTAAATAGCCGTCACCCAGGAGAGgtaaaattaattcgttctccattgattattgagcgaaatagttaacctttccttcgttctttcggaagagatttctattgcactatcataatttgaaagctttgctggactgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA