Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTTCCTGAGAAATCATACGGTGCTGATTGCCGTATATATGTGCCTGATCACCCAACAAACAGGTTTAAGAATCTTTATgtagggtatcttctcaacaactcccctttaccttaaccaaccttcatatcacctaaaggcttatgctttgattaaaatttatcag

Basic information

species Arabidopsis thaliana
transcript AT1G15110.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G15110.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA20G25830.2 (Glycine max), 5'ss of exon 9
AACTTCCTGAGAAATCATACGGTGCTGATTGCCGTATATATGTGCCTGATCACCCAACAAACAGGTTTAAGAATCTTTATgtagggtatcttctcaacaactcccctttaccttaaccaaccttcatatcacctaaaggcttatgctttg----attaaaatttatcag------------------------------
||||||| |||| ||| || || ||||| || ||||||||| |||||||  ||||  ||| ||||||||||||| |||||||| | | |||| |||  | ||    |||  ||||  |   | | | || |  |   |   |  |||||     |||   || || ||                               
AACTTCCAGAGAGATCTTATGGCGCTGACTGTCGTATATATCTGCCTGAAAACCCTGCAAGCAGGTTTAAGAATGTTTATgtatgatttctt-tcacaacctatgtttttgcttattctctcctaaaattatttt--gttcttcgctttatcatatttggatataacatggggctgatatattatgcttcatctttcag

upper sequence: AT1G15110.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv01s0011g04370.t01 (Vitis vinifera), 5'ss of exon 7
AACTTCCTGAGAAATCATACGGTGCTGATTGCCGTATATATGTGCCTGATCACCCAACAAACAGGTTTAAGAATCTTTATgtagggtatcttctcaacaactcccctttaccttaaccaaccttcatatcacctaaaggcttatgctttgattaaaatttatcag--------------------------------
|||||||||| | ||| || |||||||||||||| || |||||||||||  | ||||| | ||||||||||||| |||||||| | | |  || |||    | | ||| |   |        |   |  |||          || | |  ||   |  ||   ||                                
AACTTCCTGAAAGATCGTATGGTGCTGATTGCCGCATTTATGTGCCTGAAAATCCAACCAGCAGGTTTAAGAATGTTTATgtatgat-ttctcacaatccattcacttcaaaattgtttgtgtatgttccactgttcctgacatacatcaatatgatattgggaggcaagacttctgattttttctgttgtttctag