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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAGAAGCCTATCCAAAAGCAACAGCAGTGTTGGTACGCAATCACGGAGTTTACATTTGGGGTGATTCTTGGATCCATGCTAAGACACAGgtttgtgcaagttacttcaatatttggttgaaagttgagaaaccaacaataagttctacgccattttcttatgttatgttcatatatttgtttgtttctatttataaactttaactatcacttccag

Basic information

species Arabidopsis thaliana
transcript AT5G53850.3
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G53850.3 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA06G36620.1 (Glycine max), 5'ss of exon 5
ATAGAAGCCTATCCAAAAGCAACAGCAGTGTTGGTACGCAATCACGGAGTTTACATTTGGGGTGATTCTTGGATCCATGCTAAGACACAGgtttgtgcaagttacttcaatatttggttgaaagttgagaaaccaacaat--aagttctacgccattttcttatgttatgttc--atatatttgtttgtttctatttataaactttaactatcacttccag-----------------------------------------------------
|| |||||||| || ||| ||||||||||| | ||||||||||| ||| | || |||||||| || || ||||||  |||||| || ||||| |||| || ||  ||    |   |   | ||    |  |   || |||  | |||       | |||||  | | | ||||    | ||    |  ||  |  | | ||  | || || |   || |                                                       
ATTGAAGCCTACCCTAAAACAACAGCAGTGCTTGTACGCAATCATGGAATATATATTTGGGGAGACTCGTGGATCAGTGCTAAAACTCAGgtctgtgtaaattgtttgtccacaggaagggaatggaatcacataaaaattcatgtttatttgaactttctgctttgaagttccagaacataaaatacttggtgatgaaaatgtatagctttttatttctttgggatgtttgtttatacattatcttcttgtaaaatgggtggttttatttcag