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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTTCAGCTGATTTGTTTAAAACTGTGTTTGACCTCCTCGTATCAGTGACTGTCTTTCTTGGCCGCTTTGACATGCGAATGATGCAGgtatactatttcttatactgatgtgataggatctgatccttttatctttcctgatttgcttattatattgcttttttgtaactttccccatttttaaatgtgtag

Basic information

species Arabidopsis thaliana
transcript AT4G23000.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G23000.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: LOC_Os07g04210.1 (Oryza sativa), 5'ss of exon 7
AACTTCAGCTGATTTGTTTAAAACTGTGTTTGACCTCCTCGTATCAGTGACTGTCTTTCTTGGCCGCTTTGACATGCGAATGATGCAGgtatactatttcttatactgatgtgataggatctgatccttttatctttcctgatttgcttatta--tattgcttttttgtaactttccccatttttaaatgtgtag
 || ||| ||||||| |||||||| || ||||||||| | ||||| |||||| | ||  |||| || ||||||||||| |||||||||||||   |  | ||  | |  ||  |   | ||   ||  ||  |||||  |  |||| || |||  | |    ||||  | |  |     | |  | |     |  
GACATCAACTGATTTATTTAAAACCGTTTTTGACCTCATGGTATCTGTGACTCTTTTCGTTGGTCGGTTTGACATGCGGATGATGCAGgtatgtgacctgttgaagt--tgaaacttgttcc--tcacttcctctttt-tattttggttgttagttttcagcttttccttatctcgtgaagtcatgatcccct--

upper sequence: AT4G23000.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G018356_T02 (Zea mays), 5'ss of exon 3
AACTTCAGCTGATTTGTTTAAAACTGTGTTTGACCTCCTCGTATCAGTGACTGTCTTTCTTGGCCGCTTTGACATGCGAATGATGCAGgtatactatttcttatactgatgtgataggatctgatccttttatctttcctgatttgcttattat--attgctttt--ttgtaa-ctttccccatttttaa---atgtgtag------------------------------------------
 || ||| ||||||| ||||||||||| ||||||||| |  |||| |||||| | ||| |||| || ||||||||||| |||||||||||| |  | || ||        |  ||||   ||  |  ||  ||  || ||| ||   |  ||||  ||| ||||   || ||  |      || |  | |   |||| | |                                          
GACATCAACTGATTTATTTAAAACTGTCTTTGACCTCATGATATCTGTGACTCTGTTTGTTGGTCGATTTGACATGCGTATGATGCAGgtacatcactttttccctc--cgccatagtgcct--ttattgcatggtttctgcttgattccttatgcatttctttccgttataggcacataacagtactgatttatgtattgcactacaaagttattaacagtttttttactaaccttgaccag

upper sequence: AT4G23000.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA17G36310.1 (Glycine max), 5'ss of exon 6
AACTTCAGCTGATTTGTTTAAAACTGTGTTTGACCTCCTCGTATCAGTGACTGTCTTTCTTGGCCGCTTTGACATGCGAATGATGCAGgtatactatttcttatactgatgtgataggatctgatccttttatctttcctgatttgcttattatattgcttttttgtaactttccccatttttaaatgtgtag
||| || |||||||| || ||||| || ||||||||||| |||||||||||||||||  |||| || ||||||||||| |||||||||||| ||| ||| |  |       ||        | || || || | | |  |  |||  |||| || |    |  ||  | ||  |   ||| |    | |||| 
AACATCTGCTGATTTATTCAAAACAGTTTTTGACCTCCTGGTATCAGTGACTGTCTTCGTTGGGCGTTTTGACATGCGTATGATGCAGgta-actttttttattttctccatgcccattatttatactattctgtatgtt--tttttttataatgtgaagtactt--agctgactatattataccctctgtat

upper sequence: AT4G23000.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA14G08860.1 (Glycine max), 5'ss of exon 6
AACTTCAGCTGATTTGTTTAAAACTGTGTTTGACCTCCTCGTATCAGTGACTGTCTTTCTTGGCCGCTTTGACATGCGAATGATGCAGgtatactatttc-ttatactgatgtgataggatctgatccttttatctttcctgatttgcttattatattgcttttttgtaactttccccatttttaaatgtgtag
||| || |||||||| || ||||| || ||||||||||| |||||||||||||||||  |||| || ||||||||||| ||||||||||||   | |||  || |    |||      | |   |   || | ||  |  ||  ||  |||| || |    |  ||  | ||  |   ||| |    | ||   
AACATCTGCTGATTTATTCAAAACGGTTTTTGACCTCCTAGTATCAGTGACTGTCTTCGTTGGGCGTTTTGACATGCGTATGATGCAGgtaagtttttttattttctctatgcccattgtttatactattctgtcagtg-tgtcttttttataatgtgaagtactt--agctgactatattatactctctg---

upper sequence: AT4G23000.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv18s0001g11060.t01 (Vitis vinifera), 5'ss of exon 7
AACTTCAGCTGATTTGTTTAAAACTGTGTTTGACCTCCTCGTATCAGTGACTGTCTTTCTTGGCCGCTTTGACATGCGAATGATGCAGgtatactatttcttatactgatgtgataggatctgatccttttatctt-tcctgatttgcttattatattgcttttttgtaactttccccatttttaaatgtgtag
||| ||||||||| | ||||| || |  ||||||||||| |||||||| ||||| ||| |||| |||||||||||||| |||||||||||| |  ||| |  || ||  ||    | | | || |    ||||  | ||||  |||  ||   |||       |   |  ||||| || | | |     |    
AACATCAGCTGATCTTTTTAAGACAGCTTTTGACCTCCTGGTATCAGTAACTGTGTTTGTTGGTCGCTTTGACATGCGCATGATGCAGgtaca--attccacattcttttgcatcatggt-tgttaacattatggtgtccttttttcttttaaatagcaagaatcactctctttctccctctctctgcctc---