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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACGTGATGATGCACGGCAGTTCATGAAGTTTCTCCACCCTGACCTTGGAATAGgtaagagtttcggagaggaatgctgtttattcgaggagctaccacatcaatgattgaccatcttattgagtttgctcatgttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G15110.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G15110.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv01s0011g04370.t01 (Vitis vinifera), 5'ss of exon 6
AGACGTGATGATGCACGGCAGTTCATGAAGTTTCTCCACCCTGACCTTGGAATAGgtaagagtttcggaga--ggaatgctgtttattcgaggagctacc--acatcaatga------ttgaccatct-tattgagtttgctcatgttgcag-------------------------------------------------------------------------------
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AAACGTGATGATGCTCGGCAATTCATGAAGTTTCTCCATCCTGATCTTGGTGTTGgtaatgcatttgaactttgccaaactctcccctctgaacattacttgacatggattagtttgttttgctttctgtaatgcaccttctctt-ttgtatttgctgagacagattagcttattgactgcatattcaagatctgtctagatcgtttttaactatttgtatgacttaacag