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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAGGGATTCAAGGTCACGGATACTATGATGAACTTGTTGTCCCAATCATAGAGAACACAGCATATGAGAATGAACTAACAGATTCACTTACCAAAGCTgtaagtctaattgttctgaggaagcttgaattgaatatatgcaacaaaataatggttttaattagttttgacatatttcactctcatttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G53850.3
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G53850.3 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv19s0014g02480.t01 (Vitis vinifera), 5'ss of exon 4
AAAAGGGATTCAAGGTCACGGATACTATGATGAACTTGTTGTCCCAATCATAGAGAACACAGCATATGAGAATGAACTAACAGATTCACTTACCAAAGCTgtaagtctaattgttctgaggaagcttgaat-tgaatatatgcaacaaaataatggttttaattagttttgacatatttcactctcatttgcag-------
|||||| |||||||| || || || |||||||| ||||| |||||||||||||||||||| ||  | || |  || || |||||| | ||| |  |||||||| |||   |   |||         |   | |   | | |    |   ||    || ||  || || |||| |  ||    | | |  |  ||       
AAAAGGAATTCAAGGACATGGTTATTATGATGAGCTTGTGGTCCCAATCATAGAGAACACTGCCCACGAAAGGGAGCTCACAGATGCCCTTGCTGAAGCTgtatgtcctctctctctctctctctctctctctctctctctttttcctgatgtatgtattt-tttgtgttgatactttgagatttgaccttgagcactcaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164190881|gb|ES162228.1|ES162228
EST:     TAGAGAACACAGCATATGAGAATGAACTAACAGATTCACTTACCAAAGCT                         ATAGAAGCCTATCCAAAAGCAACAGCAG
genomic: TAGAGAACACAGCATATGAGAATGAACTAACAGATTCACTTACCAAAGCTgtaagtctaa ... tcatttgcagATAGAAGCCTATCCAAAAGCAACAGCAG