Sequence
atgc intronic sequence ATGC exonic sequenceATCTCCTGCTCCCCTTCTTGGAGATTCTGTCAAAGCAATTGTGCAGTTCTCTCTTGAAGTTTCCTGTAACCAAAATCTGGAAAGTAGCACCCGTCACCAGgttaggagaattattctctttcgcttgaaataggttcgaattgtggtgttatgattacttatgccttactccattcatttaccag
Basic information
species | Arabidopsis thaliana |
transcript | AT4G27640.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G27640.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA15G05090.1 (Glycine max), 5'ss of exon 5
ATCTCCTGCTCCCCTTCTTGGAGATTCTGTCAAAGCAATTGTGCAGTTCTCTCTTGAAGTTTCCTGTAACCAAAATCTGGAAAGTAGCACCCGTCACCAGgttagg-agaattat--------tctctttcgcttgaaataggttcga-attgtggt-gttatgattacttat---gccttactccattcatttaccag
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ATCTCCTGCACCTCTTCTTGGAGATTCAGTGAAATCTATAGTGCAGTTCTCCCTTGAGGTTTGCTCAAGTCAAAATTTAGAGTCTAACACACGTCATCAGgttggttaggatcatagagtatattgctatgactttttatacttttgctgttatggttgtttcattcacttggttgatgttatttgctccatctaacag
upper sequence: AT4G27640.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv12s0034g02160.t01 (Vitis vinifera), 5'ss of exon 5
ATCTCCTGCTCCCCTTCTTGGAGATTCTGTCAAAGCAATTGTGCAGTTCTCTCTTGAAGTTTCCTGTAACCAAAATCTGGAAAGTAGCACCCGTCACCAGgttaggagaattattctctttcgcttgaaataggttcgaattgtggtg-----ttatgattacttatgcc-ttactccattcatttaccag----------------------------------------------------------------------
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ATCTCCTGCACCTCTTCTTGGGGACTCTGTTAAATCCATTGTGCAGTTCTCTCTTGATGTTTGCTCTAGTCAAAATTTGGAATCCAACACACGCCATCAGgttaggaaggagatgaaatataatttttcctgtatttctattgttctagccaatcctaactatttgggatatcatttcattgagttggtgagatgtactttttctatttgttcctggatcctgaatatcttgttccatccttttgttttgaaatatatcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116397052|gb|EG439644.1|EG439644EST: CTCTTGAATTTTCCTGTAACCAAAATCTGGAAAGTAGCACCCGTCACCAG GCAATCCAAATAGTTTCATGGTTGGCAAAGTATAAATACAATTCCCTTAAA
genomic: CTCTTGAAGTTTCCTGTAACCAAAATCTGGAAAGTAGCACCCGTCACCAGgttaggagaa ... catttaccagGCAATCCAAATAGTTTCATGGTTGGCAAAGTATAAATACAATTCCCTTAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATCTCCTGCTCCCCTTCTTGGAGATTCTGTCAAAGCAATTGTGCAGTTCTCTCTTGAAGTTTCCTGTAACCAAAATCTGGAAAGTAGCACCCGTCACCAGgttaggagaattattctctttcgcttgaaataggttcgaattgtggtgttatgattacttatgccttactccattcatttaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG