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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCTATTGCTGCTGCCCCTATTGAAATGCCACTGGATCCAGTTGAAGGGTTTCCTCTTGATATGGCCCTTGTTTACTACTACGGCCACGCATCACCAAAgtaagtgattctcaaatttctcctacccatcatacgttattcccctcgatgaggaatttaaatatgtctactttggctctctcag

Basic information

species Arabidopsis thaliana
transcript AT3G04680.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G04680.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv14s0066g02630.t01 (Vitis vinifera), 5'ss of exon 4
GATCTATTGCTGCTGCCCCTATTGAAATGCCACTGGATCCAGTTGAAGGGTTTCCTCTTGATATGGCCCTTGTTTACTACTACGGCCACGCATCACCAAAgtaagtgat----tctcaaatttctcctacccatcatacgttattcccctcgatg-aggaatttaaatatgtctactttggctctctcag-------------------------------------------------------------------------
||| |||||||||| |||| |||||||||||| | |||||||| || ||  |||||||||| ||| | |||||||| | ||| |||||| || | || | |||| |       | | | | || |  |    ||  | | |  |||||||  ||  |  |||||  || |  |||     |  | |   |                                                                         
GATGTATTGCTGCTACCCCAATTGAAATGCCAATTGATCCAGTGGATGGAATTCCTCTTGAAATGCCTCTTGTTTATTTCTATGGCCACACAACTCCTAGgtaacttgcattgtttaacactttttatggttattgt-catctttccccttcatatactaatttccatttagctaagaatgtgcccctggacactttctgtttagtttaaaataaagtcattttgtcctaaattcttctggtatgttttgggtttggtgttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163971423|gb|ES036483.1|ES036483
EST:     TTTCCTCTTGATATGGCCCTTGTTTACTACTACGGCCACGCATCACCAAA                         TATGAACGTTGAACTGTACAAAGC
genomic: TTTCCTCTTGATATGGCCCTTGTTTACTACTACGGCCACGCATCACCAAAgtaagtgatt ... gctctctcagTATGAACGTTGAACTGTACAAAGC