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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGAAGCTTAGAATGCAAGGAGCTTGTAGCGGTTGTCCAAGTTCATCTGTTACTTTGAAATCCGGAATTGAGAATATGCTTATGCATTATGTTTCCGAGgtaaagctgataaggagatgtcctaccatttatcatttctgttattcttttgctgttgagggagaatcatgatcttgttaatagtctactcttgttctctaatcattactcaccaaagcgtttgtgcaaaacacag

Basic information

species Arabidopsis thaliana
transcript AT1G51390.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G51390.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G131249_T03 (Zea mays), 5'ss of exon 5
AGTGAAGCTTAGAATGCAAGGAGCTTGTAGCGGTTGTCCAAGTTCATCTGTTACTTTGAAATCCGGAATTGAGAATATGCTTATGCATTATGTTTCCGAGgtaaagctgataaggagatgtcctaccatttatcatttctgttattcttttgctgttgagggagaatcatgatcttgttaatagtctactcttgttctctaatcattactcaccaaagcgtttgtgcaaaacacag
||| ||||||| ||||||||| || || ||||| ||||||||||| || || || ||||| || || || || || ||||||||||| |||||  | ||||| |   ||| |   |  | | ||      |    ||||  | || ||  || |    |       ||   || |  | | |||  | |    ||  | || ||                                
AGTTAAGCTTAAAATGCAAGGTGCCTGCAGCGGCTGTCCAAGTTCGTCAGTCACATTGAAGTCTGGGATAGAAAACATGCTTATGCACTATGTGCCTGAGgtgaca-tga-agcaatttattctgtttgctgatgtttcc-taatgctcgtggttcaaaaaattgttctctatttgataactagaatgcgaa-gtggtttattc--------------------------------

upper sequence: AT1G51390.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA20G38630.1 (Glycine max), 5'ss of exon 4
AGTGAAGCTTAGAATGCAAGGAGCTTGTAGCGGTTGTCCAAGTTCATCTGTTACTTTGAAATCCGGAATTGAGAATATGCTTATGCATTATGTTTCCGAGgtaaagctgataaggagatgtcctaccatttatcatttctgttattcttttgctgttgagggagaatcatgat-cttgttaatagtctactc---ttgttctctaatcattactcaccaaagcgtttgtgcaaaacacag
||| || |||||||||||||| || || || || || ||||||||||| || ||| ||||||| || ||||| |||||||| |||||||||||| | |||||||  |   |  |   || || |    ||||| ||   | | || | |||  | ||         |||| || |||| ||  |||  | |    | |     | | |||||                            
AGTAAAACTTAGAATGCAAGGGGCATGCAGTGGCTGCCCAAGTTCATCAGTGACTCTGAAATCAGGCATTGAAAATATGCTGATGCATTATGTTCCTGAGgtaa--caagtttgacaatatctt----tttatgatgagtataatgcatttattattt--------tcattatacttgatagaagtagaattgattagaatcttgaacattatc--------------------------

upper sequence: AT1G51390.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv13s0106g00620.t01 (Vitis vinifera), 5'ss of exon 5
AGTGAAGCTTAGAATGCAAGGAGCTTGTAGCGGTTGTCCAAGTTCATCTGTTACTTTGAAATCCGGAATTGAGAATATGCTTATGCATTATGTTTCCGAGgtaaagctgataaggagatgtcctacca--tttatcatt-tctgttattcttttgctgttgagggagaatcatgatcttgttaatagtctact-cttgttctctaatcattactcaccaaagcgtttgtgcaaaacacag
||| || || | |||||||||||| ||||| || || || || |||||||||||  ||||||| || ||||| |||||||| ||||| |||||  | |||||||   | || ||    ||  ||   |  || ||  |  |||   ||   |       || |     ||||  ||  |||  || || || | | | ||                                        
AGTTAAACTAAAAATGCAAGGAGCATGTAGTGGCTGCCCTAGCTCATCTGTTACACTGAAATCTGGCATTGAAAATATGCTGATGCACTATGTACCTGAGgtaacaatcattagtttctgcacttatagattcattgtggtctaacatgaatgcatcaatgtgcacccatca-aattgtgtgtattgtgtattgcgtattt---------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125221576|gb|EL235661.1|EL235661
EST:     TTACTTTGAAATCCGGAATTGAGAATATGCTTATGCATTATGTTTCCGAG                         GTCAAAGGTGTTGAGCAAGAATTCGATGGTGAAGAGGAGGGAAC
genomic: TTACTTTGAAATCCGGAATTGAGAATATGCTTATGCATTATGTTTCCGAGgtaaagctga ... caaaacacagGTCAAAGGTGTTGAGCAAGAATTCGATGGTGAAGAGGAGGGAAC
EST: gi|164123750|gb|ES058951.1|ES058951
EST:     TTACTTTGAAATCCGGAATTGAGAATATGCTTATGCATTATGTTTCCGAG                         GTCAAAGGTGTTGAGCAAGAATTCGATGGTG
genomic: TTACTTTGAAATCCGGAATTGAGAATATGCTTATGCATTATGTTTCCGAGgtaaagctga ... caaaacacagGTCAAAGGTGTTGAGCAAGAATTCGATGGTG