Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTCTAATCAGGCCCCATCCTGCAATCTGGCGCTTAGTTCATGGAATGGCCGTCATTTACTTAGTTGCACTTACTTTTTTGCTCTTTCAGgttcacttttttttcctccctagatccttcttacttgcctatgcctgtgatttatatatggattcttgttttaagtgagcaaactctaatagttacattattcatgctcccag

Basic information

species Arabidopsis thaliana
transcript AT1G15110.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G15110.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA10G41430.1 (Glycine max), 5'ss of exon 5
GGTTCTAATCAGGCCCCATCCTGCAATCTGGCGCTTAGTTCATGGAATGGCCGTCATTTACTTAGTTGCACTTACTTTTTTGCTCTTTCAGgttcacttttttttcctccctagatccttcttacttgcctatgcctgtgatttatatatggattcttgttttaagtgagcaaactcta-atagttacattattcatgctcccag-
|||||| || ||||| ||||||||||| |||||||| |||||||||||||| ||  ||||| | ||||| || || |||||||| |||||||||    |   | ||     |  |   |||||       | ||  |    ||||  ||       || | | ||| |   ||| | || ||  ||  | | |   |  |  ||| 
GGTTCTTATTAGGCCACATCCTGCAATTTGGCGCTTGGTTCATGGAATGGCTGTTGTTTACCTTGTTGCCCTCACATTTTTGCTTTTTCAGgttggtctccatgtctcaatttaactattctt-------tttgtgtaaagtttaagtag------ttttgtcaagcg--taaattttacatttttgtagtgtattttgtagcaga

upper sequence: AT1G15110.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA20G25830.2 (Glycine max), 5'ss of exon 7
GGTTCTAATCAGGCCCCATCCTGCAATCTGGCGCTTAGTTCATGGAATGGCCGTCATTTACTTAGTTGCACTTACTTTTTTGCTCTTTCAGgttcacttttttttcctccctagatccttcttacttgcctatgcctgtgatttatata-tggattcttgttttaagtgagcaaactctaatagttacattattcatgctcccag
|||||| || ||||| ||||||||||| |||||||| |||||||| ||||| ||  | ||| ||||||| || || |||||||| |||||||||       ||| | |  ||  ||   |||   ||   | ||  |    ||||  || |    ||  | || || |  |||   | |  ||||     ||||  |||||    
GGTTCTTATTAGGCCACATCCTGCAATTTGGCGCTTGGTTCATGGCATGGCTGTTGTATACCTAGTTGCCCTCACATTTTTGCTTTTTCAGgttgg-----tttccatgtctcaatttatcta--ttctttgtgtgtaaagtttaagtaattttgtcaagcttaaactttgca--tttttgtagtg----tatttttgctctag-