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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGTTTCCTTCAACATTGGCGAATTTATCAAGAATGGAGATACTGATCAAGGATGCTAACGCAAAGGCGACTGCAAATATCAAACTTTTGAACTCGgtaacacactcaaaccctttttccaaagtttgattatttgtttactcagaatcacaaaggaggtttctcacagtggcagaaaaatgcag

Basic information

species Arabidopsis thaliana
transcript AT2G42130.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116394668|gb|EG437260.1|EG437260
EST:     TCAAGGATGCTAACGCAAAGGCGACTGCAAATATCAAACTTTTGAACTCG                         ATAGAAAGCAAAATCATTCTGTCATCAAAATTGACTGTTGAGGGACCACTG
genomic: TCAAGGATGCTAACGCAAAGGCGACTGCAAATATCAAACTTTTGAACTCGgtaacacact ... aaaaatgcagATAGAAAGCAAAATCATTCTGTCATCAAAATTGACTGTTGAGGGACCACTG
EST: gi|116394267|gb|EG436859.1|EG436859
EST:     TCAAGGATGCTAACGCAAAGGCGACTGCAAATATCAAACTTTTGAACTCG                         ATAGAAAGCAAAATCATTCTGTCATCAAAATTGACTGTTGAGGGACCACTG
genomic: TCAAGGATGCTAACGCAAAGGCGACTGCAAATATCAAACTTTTGAACTCGgtaacacact ... aaaaatgcagATAGAAAGCAAAATCATTCTGTCATCAAAATTGACTGTTGAGGGACCACTG
EST: gi|116394271|gb|EG436863.1|EG436863
EST:     TCAAGGATGCTAACGCAAAGGCGACTGCAAATATCAAACTTTTGAACTCG                         ATAGAAAGCAAAATCATTCTGTCATCAAAATTGACTGTTGAGGGACCACTG
genomic: TCAAGGATGCTAACGCAAAGGCGACTGCAAATATCAAACTTTTGAACTCGgtaacacact ... aaaaatgcagATAGAAAGCAAAATCATTCTGTCATCAAAATTGACTGTTGAGGGACCACTG
EST: gi|116394268|gb|EG436860.1|EG436860
EST:     TCAAGGATGCTAACGCAAAGGCGACTGCAAATATCAAACTTTTGAACTCG                         ATAGAAAGCAAAATCATTCTGTCATCAAAATTGACTGTTGAGGGACCACTG
genomic: TCAAGGATGCTAACGCAAAGGCGACTGCAAATATCAAACTTTTGAACTCGgtaacacact ... aaaaatgcagATAGAAAGCAAAATCATTCTGTCATCAAAATTGACTGTTGAGGGACCACTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGGTTTCCTTCAACATTGGCGAATTTATCAAGAATGGAGATACTGATCAAGGATGCTAACGCAAAGGCGACTGCAAATATCAAACTTTTGAACTCGgtaacacactcaaaccctttttccaaagtttgattatttgtttactcagaatcacaaaggaggtttctcacagtggcagaaaaatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG