1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GAGGTTTCCTTCAACATTGGCGAATTTATCAAGAATGGAGATACTGATCAAGGATGCTAACGCAAAGGCGACTGCAAATATCAAACTTTTGAACTCGgtaacacactcaaaccctttttccaaagtttgattatttgtttactcagaatcacaaaggaggtttctcacagtggcagaaaaatgcag
species | Arabidopsis thaliana |
transcript | AT2G42130.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCAAGGATGCTAACGCAAAGGCGACTGCAAATATCAAACTTTTGAACTCG ATAGAAAGCAAAATCATTCTGTCATCAAAATTGACTGTTGAGGGACCACTGEST: gi|116394267|gb|EG436859.1|EG436859
genomic: TCAAGGATGCTAACGCAAAGGCGACTGCAAATATCAAACTTTTGAACTCGgtaacacact ... aaaaatgcagATAGAAAGCAAAATCATTCTGTCATCAAAATTGACTGTTGAGGGACCACTG
EST: TCAAGGATGCTAACGCAAAGGCGACTGCAAATATCAAACTTTTGAACTCG ATAGAAAGCAAAATCATTCTGTCATCAAAATTGACTGTTGAGGGACCACTGEST: gi|116394271|gb|EG436863.1|EG436863
genomic: TCAAGGATGCTAACGCAAAGGCGACTGCAAATATCAAACTTTTGAACTCGgtaacacact ... aaaaatgcagATAGAAAGCAAAATCATTCTGTCATCAAAATTGACTGTTGAGGGACCACTG
EST: TCAAGGATGCTAACGCAAAGGCGACTGCAAATATCAAACTTTTGAACTCG ATAGAAAGCAAAATCATTCTGTCATCAAAATTGACTGTTGAGGGACCACTGEST: gi|116394268|gb|EG436860.1|EG436860
genomic: TCAAGGATGCTAACGCAAAGGCGACTGCAAATATCAAACTTTTGAACTCGgtaacacact ... aaaaatgcagATAGAAAGCAAAATCATTCTGTCATCAAAATTGACTGTTGAGGGACCACTG
EST: TCAAGGATGCTAACGCAAAGGCGACTGCAAATATCAAACTTTTGAACTCG ATAGAAAGCAAAATCATTCTGTCATCAAAATTGACTGTTGAGGGACCACTG
genomic: TCAAGGATGCTAACGCAAAGGCGACTGCAAATATCAAACTTTTGAACTCGgtaacacact ... aaaaatgcagATAGAAAGCAAAATCATTCTGTCATCAAAATTGACTGTTGAGGGACCACTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGGTTTCCTTCAACATTGGCGAATTTATCAAGAATGGAGATACTGATCAAGGATGCTAACGCAAAGGCGACTGCAAATATCAAACTTTTGAACTCGgtaacacactcaaaccctttttccaaagtttgattatttgtttactcagaatcacaaaggaggtttctcacagtggcagaaaaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG