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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCTAGCTGGTTCATCTTTGCTGATACTAGCAAATAAGCAGGATATTCAAGGTGCACTAACACCTGATGAAATTGGCAAGgtaagggttttgaaactcataagtcgatttggacataggggttatcgggttgaatcattttgtctctcggtcgggtttctcaacttcagtgaagattagtgggttaagtaagatatgttttgagttgtatattgtgtgttaaactgagtttcatcttcttgcttatgaag

Basic information

species Arabidopsis thaliana
transcript AT2G18390.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G18390.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv04s0023g01820.t01 (Vitis vinifera), 5'ss of exon 5
AGGCTAGCTGGTTCATCTTTGCTGATACTAGCAAATAAGCAGGATATTCAAGGTGCACTAACACCTGATGAAATTGGCAAGgtaagggttttgaaactcataagtcgatttggacataggggttatcgggttgaatcattttgtctctcggtcgggtttctcaacttcagtgaagattagtgggttaagtaagatatgttttgagttgtatattgtgtgttaaactgagtttcatcttcttgcttatgaag
|||||  | ||  |||| ||||||||||||||||||||||| |||||  | || || || ||||| |  ||||| |  |||||||||||           | | ||  ||| |    | |  |  |     |      | ||  ||       |  |||   ||  |  ||     ||| |                                                                      
AGGCTGTCGGGAGCATCCTTGCTGATACTAGCAAATAAGCAAGATATAAATGGAGCTCTTACACCAGCAGAAATAGCTAAGgtaagggtgcatggtgatgtta-tctttttagtttcaagattctttaatgtagcctttcttacctagtatgtgaattttcaaatatttgtaggccttaata---------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86075124|gb|DR370881.1|DR370881
EST:     CAAATAAGCAGGATATTCAAGGTGCACTAACACCTGATGAAATTGGCAAG                         GTGCTAAACTTAGAGTCCATGGATAAAAGCCGGCACTGGAAGATAGTGGGT
genomic: CAAATAAGCAGGATATTCAAGGTGCACTAACACCTGATGAAATTGGCAAGgtaagggttt ... gcttatgaagGTGCTAAACTTAGAGTCCATGGATAAAAGCCGGCACTGGAAGATAGTGGGT