Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTCCTTTTGTAGATGCTTATTTCCTCAGTCCACAAGACCAAACTTACGACTGGAGCGGCGTATCACCGCGAAAATCCTACCTTCAGACCATCTTAACGgtacttgaaaacacataattaagtcattaccatcagttgtaggaattatcatgatggcgatcccaaatactaattagtatttataatgtgtag

Basic information

species Arabidopsis thaliana
transcript AT1G25230.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86018669|gb|DR314415.1|DR314415
EST:     ACTGGAGCGGCGTATCACCGCGAGAATCCTACCTTCAGACTATCTTAACG                         GAGTTGGAGATGGGTCTAAGAGAATCAAGTGCAAAATGGAAAATTGTGGTG
genomic: ACTGGAGCGGCGTATCACCGCGAAAATCCTACCTTCAGACCATCTTAACGgtacttgaaa ... taatgtgtagGAGTTGGAGATGGGTCTAAGAGAATCAAGTGCAAAATGGAAAATTGTGGTG
EST: gi|86078770|gb|DR374527.1|DR374527
EST:     ACTGGAGCGGCGTATCACCGCGAGAATCCTACCTTCAGACTATCTTAACG                         GAGTTGGAGATGGGTCTAAGAGAATCAAGTGCAAAATGGAAAATTGTGGTG
genomic: ACTGGAGCGGCGTATCACCGCGAAAATCCTACCTTCAGACCATCTTAACGgtacttgaaa ... taatgtgtagGAGTTGGAGATGGGTCTAAGAGAATCAAGTGCAAAATGGAAAATTGTGGTG
EST: gi|125292435|gb|EL306520.1|EL306520
EST:     ACTGGAGCGGNGTATCACCGCGAAAATCCTACCTTCAGACCATCTTAACG                         GAGTTGGAGATGGGTCTAAGAGAATCA
genomic: ACTGGAGCGGCGTATCACCGCGAAAATCCTACCTTCAGACCATCTTAACGgtacttgaaa ... taatgtgtagGAGTTGGAGATGGGTCTAAGAGAATCA