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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAAGAGAATTGCTCAAGAAATCGCTAATCTTGAGAAAGATACAGGATTCAAGTTGAGAGTCTTGGCTCAAAACTATCCCGTTACCCCTGgtatgatatatgcttggaaaacaacatacttgatctctatagaagtttacttagtgacatttctctgtgtttgcaacag

Basic information

species Arabidopsis thaliana
transcript AT5G52970.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G52970.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os07g34950.2 (Oryza sativa), 5'ss of exon 3
GAGAAGAGAATTGCTCAAGAAATCGCTAATCTTGAGAAAGATACAGGATTCAAGTTGAGAGTCTTGGCTCAAAACTATCCCGTTACCCCTGgtatgatatatgcttggaaaacaacatac--ttgatctctatagaagtt---tactta-gtgacatttctctgtgtttgcaacag---------------
|| ||  |  |   ||||||||| |   ||||||||||||||||||||| ||||||||||||  | || ||||| ||||| | ||| || |||    | |     ||    |  |||||   ||   || | |    |||   || |||    | || | | |   |       |                
GAAAACCGTCTGCGTCAAGAAATAGAAGATCTTGAGAAAGATACAGGATACAAGTTGAGAGTTCTTGCACAAAATTATCCTGATACACCAGgtgctttttgcttctgttttattacatatagttatcctttgtttgtgttatctaattatacaatatatttatagatacatggtaacattgtgtggcaaca

upper sequence: AT5G52970.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv08s0040g01400.t01 (Vitis vinifera), 5'ss of exon 3
GAGAAGAGAATTGCTCAAGAAATCGCTAATCTTGAGAAAGATACAGGATTCAAGTTGAGAGTCTTGGCTCAAAACTATCCCGTTACCCCTGgtatgatatat-gcttggaaaacaacatacttgat--ctctatagaagtttacttagtgacatttctctgtgttt--gcaacag--------------------------------
||||||||  | || || || ||| ||||| |||| || |||||||||||||||||||||||  | ||||| |||||||| |  |||||||||||  | ||| | |    ||| ||  || ||  |  ||   |   | |||  || ||   | ||       ||   | ||||                                 
GAGAAGAGGCTGGCACAGGAGATCACTAATATTGAAAAGGATACAGGATTCAAGTTGAGAGTTCTAGCTCAGAACTATCCTGACACCCCTGgtatattttattgatctttaaataatttatttctttacttcttcctacttttgtttgtcctagtttaaaaaattgaaggaacaactgaaatcactttaattcctcaacttttacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163996652|gb|ES055980.1|ES055980
EST:     CTATCCCGTTACACCTG                         GACTAGCAATCAAAGATTTCTGGCAGGTGGATGATAGCACAATTGTGTTTG
genomic: CTATCCCGTTACCCCTGgtatgatata ... tttgcaacagGACTAGCAATCAAAGATTTCTGGCAGGTGGATGATAGCACAATTGTGTTTG
EST: gi|124966855|gb|EL040931.1|EL040931
EST:     TACAGGATTCAAGTTGAGAGTCTTGGCTCAAAACTATCCCGTTACCCCTG                         GACTAGCAATCAAAGATTTCTGGCAAGGTGGATGATAGCACAATTGTGTTT
genomic: TACAGGATTCAAGTTGAGAGTCTTGGCTCAAAACTATCCCGTTACCCCTGgtatgatata ... tttgcaacagGACTAGCAATCAAAGATTTCTGGCA-GGTGGATGATAGCACAATTGTGTTT
EST: gi|124715159|gb|EH806561.1|EH806561
EST:     TACAGGATTCAAGTTGAGAGTCTTGGCTCAAAACTATCCCGTTACCCCTG                         GACTAGCAATCAAAGATTTCTGGCAGG
genomic: TACAGGATTCAAGTTGAGAGTCTTGGCTCAAAACTATCCCGTTACCCCTGgtatgatata ... tttgcaacagGACTAGCAATCAAAGATTTCTGGCAGG
EST: gi|124889806|gb|EH968708.1|EH968708
EST:     TACAGGATTCAAGTTGAGAGTCTTGGCTCAAAACTATCCCGTTACCCCTG                         GACTAGCAATCAAAGATTTCTGGCAGG
genomic: TACAGGATTCAAGTTGAGAGTCTTGGCTCAAAACTATCCCGTTACCCCTGgtatgatata ... tttgcaacagGACTAGCAATCAAAGATTTCTGGCAGG
EST: gi|125307315|gb|EL321400.1|EL321400
EST:     ATTCAAGTTGAGAGTCTTGGCTCAAAACTATCCCGTTACCCCTG                         GACTAGCAATCAAAGATTTCTGGCAGGTGGATGATAGCACAATTGTGTTTG
genomic: ATTCAAGTTGAGAGTCTTGGCTCAAAACTATCCCGTTACCCCTGgtatgatata ... tttgcaacagGACTAGCAATCAAAGATTTCTGGCAGGTGGATGATAGCACAATTGTGTTTG
EST: gi|124910722|gb|EH984802.1|EH984802
EST:     ATCCCGTTACCCCTG                         GACTAGCAATCAAAGATTTCTGGCAGGTGGATGATAGCACAATTGTGTTTG
genomic: ATCCCGTTACCCCTGgtatgatata ... tttgcaacagGACTAGCAATCAAAGATTTCTGGCAGGTGGATGATAGCACAATTGTGTTTG
EST: gi|125210796|gb|EL225750.1|EL225750
EST:     TACAGGATTCAAGTTGAGAGTCTTGGCTCAAAACTATCCCGTTACCCCTG                         GACTAGCAATCAAAGATTTCTGGCAGGTGGATGATA
genomic: TACAGGATTCAAGTTGAGAGTCTTGGCTCAAAACTATCCCGTTACCCCTGgtatgatata ... tttgcaacagGACTAGCAATCAAAGATTTCTGGCAGGTGGATGATA
EST: gi|124865612|gb|EH950049.1|EH950049
EST:     TACAGGATTCAAGTTGAGAGTCTTGGCTCAAAACTATCCCGTTACCCCTG                         GACTAGCAATCAAAGATTTCTGGCAGGTGGATGATAGCACAATTG
genomic: TACAGGATTCAAGTTGAGAGTCTTGGCTCAAAACTATCCCGTTACCCCTGgtatgatata ... tttgcaacagGACTAGCAATCAAAGATTTCTGGCAGGTGGATGATAGCACAATTG
EST: gi|124776677|gb|EH866754.1|EH866754
EST:     TACAGGATTCAAGTTGAGAGTCTTGGCTCAAAACTATCCCGTTACCCCTG                         GACTAGCAATCAAAGATTTCTGGCAGGTGGA
genomic: TACAGGATTCAAGTTGAGAGTCTTGGCTCAAAACTATCCCGTTACCCCTGgtatgatata ... tttgcaacagGACTAGCAATCAAAGATTTCTGGCAGGTGGA