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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGTGCCTCATCATCTTATCGACATTTTGCATCCGTCTCAAGgtatttgtcgactttgttgctattgcaaatgccactagtgtagatgcttctgatactgatgtatgtaaaggaagaaacttacacatttttccatgctttgttag

Basic information

species Arabidopsis thaliana
transcript AT5G20040.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86052818|gb|DR348575.1|DR348575
EST:     GTGGTGCCTCATCATCTTATCGACATTTTGCATCCGTCTCAAG                         ACTACTCTGTGGGGCAATTTTATGATGATGGAAGGCA-GCTACCAAAGATA
genomic: GTGGTGCCTCATCATCTTATCGACATTTTGCATCCGTCTCAAGgtatttgtcg ... gctttgttagACTACTCTGTGGGGCAATTTTATGATGATGGAAGGCAAGCTACCAAAGATA
EST: gi|86052820|gb|DR348577.1|DR348577
EST:     GTGGTGCCTCDNCATCTTATCTACATTTTGCATCCGTCTCAAG                         ACTACTCTGTGGGGCAATTTTATGATGAT
genomic: GTGGTGCCTCATCATCTTATCGACATTTTGCATCCGTCTCAAGgtatttgtcg ... gctttgttagACTACTCTGTGGGGCAATTTTATGATGAT
EST: gi|86052814|gb|DR348571.1|DR348571
EST:     GTGGTRCCTCATCATCTTATCGACATTTTGCATCCGTCTCAAG                         A-TACTCTGTGGGG
genomic: GTGGTGCCTCATCATCTTATCGACATTTTGCATCCGTCTCAAGgtatttgtcg ... gctttgttagACTACTCTGTGGGG
EST: gi|86052817|gb|DR348574.1|DR348574
EST:     GTGGTGCCTCATCATCTTATCGACATTTTGCATCCGTCTCAAG                         ACTACTCTGTGGGGCAAT
genomic: GTGGTGCCTCATCATCTTATCGACATTTTGCATCCGTCTCAAGgtatttgtcg ... gctttgttagACTACTCTGTGGGGCAAT