1 5' 3' | 2 5' 3' | 3 5' 3' |
GTGAAGATCGTTTTCGAGGAGCCTCAACCAGGAGTCACCATTGTCAATCTTACTCACACTGACGTTCCTGAAGAGGACAGgttagttttactcatggcatgtctatcttatagtcttacttataatgagttgctcttgattctgagtctgaactttgggattaggaaacaaaaaaggagc...
species | Arabidopsis thaliana |
transcript | AT3G12050.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCTTACTTCACACTGACGTTCCTGAAGAGGACAG ATACGGGAATGCGACTGTGGTGGAAAACACTGAGAGAGGATGGAGAGATCTEST: gi|86087237|gb|DR382996.1|DR382996
genomic: TCTTAC-TCACACTGACGTTCCTGAAGAGGACAGgttagtttta ... gttgatgcagATACGGGAATGCGACTGTGGTGGAAAACACTGAGAGAGGATGGAGAGATCT
EST: GKAGTCACCATTGTCAATCTTMCTCACACTGACGTTCCTGAAGAGGACAG ATACGGGAATGCGACTGTGGTGGAAAACACTGAGAGAGGATGGAGAGATCTEST: gi|86080472|gb|DR376229.1|DR376229
genomic: GGAGTCACCATTGTCAATCTTACTCACACTGACGTTCCTGAAGAGGACAGgttagtttta ... gttgatgcagATACGGGAATGCGACTGTGGTGGAAAACACTGAGAGAGGATGGAGAGATCT
EST: GAGTCACCATTGTCAATCTTACTCAACACTGACGTTCCTGAAGAGGACAG ATACGGGAATGCGACTGTGGTGGAAAACACTGAGAGAGGATGGAGAGATCTEST: gi|86080882|gb|DR376639.1|DR376639
genomic: GAGTCACCATTGTCAATCTTACTCA-CACTGACGTTCCTGAAGAGGACAGgttagtttta ... gttgatgcagATACGGGAATGCGACTGTGGTGGAAAACACTGAGAGAGGATGGAGAGATCT
EST: GAGTCACCATTGTCAATCTTACTCNACACTGACGTTCCTGAAGAGGACAG ATACGGGAATGCGACTGTGGTGGAAAACACTGAGAGAGGATGGAGAGATCTEST: gi|164120505|gb|ES004847.1|ES004847
genomic: GAGTCACCATTGTCAATCTTACTC-ACACTGACGTTCCTGAAGAGGACAGgttagtttta ... gttgatgcagATACGGGAATGCGACTGTGGTGGAAAACACTGAGAGAGGATGGAGAGATCT
EST: TCTTACTCACACTGACGTTCCTGAAGAGGACAG ATACGGGAATGCGACTGTGGTGGAAAACACTGAGAGAGGATGGAGAGATCT
genomic: TCTTACTCACACTGACGTTCCTGAAGAGGACAGgttagtttta ... gttgatgcagATACGGGAATGCGACTGTGGTGGAAAACACTGAGAGAGGATGGAGAGATCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGAAGATCGTTTTCGAGGAGCCTCAACCAGGAGTCACCATTGTCAATCTTACTCACACTGACGTTCCTGAAGAGGACAGgttagttttactcatggcatgtctatcttatagtcttacttataatgagttgctcttgattctgagtctgaactttgggattaggaaacaaaaaaggagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA