1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CTTTGAGCAGACTGATGGTTTGGTTTGGGTGGTTGATAGTTCTGATCTTAGGAGGTTAGATGATTGCAAGATGGAACTTGACAATCTCTTGAAAGAAGAGgtatattcataaaagtatcaatatctattcaatcaaaagcttttgtaagctgaagcttgggttgctgtttttggtgaagatgattcatattcaaatcttggttttaatggcag
species | Arabidopsis thaliana |
transcript | AT2G18390.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AACTTGACAATCTCTTGAAAGAAGAG AGGCTAGCTGGTTCATCTTTGCTGATACTAGCAAATAAGCAGGATATTCAAEST: gi|86075124|gb|DR370881.1|DR370881
genomic: AACTTGACAATCTCTTGAAAGAAGAGgtatattcat ... ttaatggcagAGGCTAGCTGGTTCATCTTTGCTGATACTAGCAAATAAGCAGGATATTCAA
EST: GGAGGTTAGATGATTGCAAGATGGAACTTGACAATCTCTTGAAAGAAGAG AGGCTAGCTGGTTCATCTTTGCTGATACTAGCAAATAAGCAGGATATTCAA
genomic: GGAGGTTAGATGATTGCAAGATGGAACTTGACAATCTCTTGAAAGAAGAGgtatattcat ... ttaatggcagAGGCTAGCTGGTTCATCTTTGCTGATACTAGCAAATAAGCAGGATATTCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTTGAGCAGACTGATGGTTTGGTTTGGGTGGTTGATAGTTCTGATCTTAGGAGGTTAGATGATTGCAAGATGGAACTTGACAATCTCTTGAAAGAAGAGgtatattcataaaagtatcaatatctattcaatcaaaagcttttgtaagctgaagcttgggttgctgtttttggtgaagatgattcatattcaaatcttggttttaatggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG