1 5' 3' | 2 5' 3' | 3 5' 3' |
TTTGTCCAAGGACGAAATTTTGTGCAAGAAACGTTTTGAATCGTATGAAGAAAGTTCTAAGAAAAATCAAATTAGAATGGTCACTCTTTTTGGGCAGCAGgtaaagatttttaacgttatgtcgctagtatactattttaaatctttttgttctcattgttgcctttgttcttaattaaaatagcaaaaatacatgttcatcaactctcatttcag
species | Arabidopsis thaliana |
transcript | AT1G62530.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AAAGTTCTAAGAAAAATCAAATTAGAATGGTCACTCTTTTTGGGCAGCAG GTGTATACAGCAAGAGACGAGAGCTTTGTGTCGTGTAATGAGCAGGTGAATEST: gi|116451558|gb|EG494150.1|EG494150
genomic: AAAGTTCTAAGAAAAATCAAATTAGAATGGTCACTCTTTTTGGGCAGCAGgtaaagattt ... ctcatttcagGTGTATACAGCAAGAGACGAGAGCTTTGTGTCGTGTAATGAGCAGGTGAAT
EST: AAAGTTCTAAGAAAAATCAAATTAGAATGGTCACTCTTTTTGGGCAGTAG GTGTATACAGCAAGAGACGAGAGCTTTGTGTCGTGTAATGAGCAGGTGAATEST: gi|116451565|gb|EG494157.1|EG494157
genomic: AAAGTTCTAAGAAAAATCAAATTAGAATGGTCACTCTTTTTGGGCAGCAGgtaaagattt ... ctcatttcagGTGTATACAGCAAGAGACGAGAGCTTTGTGTCGTGTAATGAGCAGGTGAAT
EST: AAAGTTCTAAGAAAAATCAAATTAGAATGGTCACTCTTTTTGGGCAGCAG GTGTATACAGCAAGAGACGAGAGCTTTGTGTCGTGTAATGAGCAGGTGAATEST: gi|116451570|gb|EG494162.1|EG494162
genomic: AAAGTTCTAAGAAAAATCAAATTAGAATGGTCACTCTTTTTGGGCAGCAGgtaaagattt ... ctcatttcagGTGTATACAGCAAGAGACGAGAGCTTTGTGTCGTGTAATGAGCAGGTGAAT
EST: AAAGTTCTAAGAAAAATCAAATTAGAATGGTCACTCTTTTTGGGCAGCAG GTGTATACAGCAAGAGACGAGAGCTTTGTGTCGTGTAATGAGCAGGTGAATEST: gi|116451574|gb|EG494166.1|EG494166
genomic: AAAGTTCTAAGAAAAATCAAATTAGAATGGTCACTCTTTTTGGGCAGCAGgtaaagattt ... ctcatttcagGTGTATACAGCAAGAGACGAGAGCTTTGTGTCGTGTAATGAGCAGGTGAAT
EST: AAAGTTTTAAGAAAAATCAAATTAGAATGGTCACTCTTTTTGGGCAGCAG GTGTATACAGCAAGAGACGAGAGCTTTGTGTCGTGTAATGAGCAGGTGAATEST: gi|116451556|gb|EG494148.1|EG494148
genomic: AAAGTTCTAAGAAAAATCAAATTAGAATGGTCACTCTTTTTGGGCAGCAGgtaaagattt ... ctcatttcagGTGTATACAGCAAGAGACGAGAGCTTTGTGTCGTGTAATGAGCAGGTGAAT
EST: AAAGTTCTAAGAAAAATCAGATTAGAATGGTCACTCTTTTTGGGCAGCAG GTGTATACAGCAAGAGACGAGAGCTTTGTGTCGTGTAATGAGCAGGTGAATEST: gi|116451557|gb|EG494149.1|EG494149
genomic: AAAGTTCTAAGAAAAATCAAATTAGAATGGTCACTCTTTTTGGGCAGCAGgtaaagattt ... ctcatttcagGTGTATACAGCAAGAGACGAGAGCTTTGTGTCGTGTAATGAGCAGGTGAAT
EST: AAAGTTCTAAGAAAAATCAAATTAGAATGGTCACTCTTTTTGGGCAGTAG GTGTATACAGCAAGAGACGAGAGCTTTGTGTCGTGTAATGAGCAGGTGAATEST: gi|116451555|gb|EG494147.1|EG494147
genomic: AAAGTTCTAAGAAAAATCAAATTAGAATGGTCACTCTTTTTGGGCAGCAGgtaaagattt ... ctcatttcagGTGTATACAGCAAGAGACGAGAGCTTTGTGTCGTGTAATGAGCAGGTGAAT
EST: AAAGTTCTAAGAAAAATCAGATTAGAATGGTCACTCTTTTTGGGCAGCAG GTGTATACAGCAAGAGACGAGAGCTTTGTGTCGTGTAATGAGCAGGTGAATEST: gi|116451569|gb|EG494161.1|EG494161
genomic: AAAGTTCTAAGAAAAATCAAATTAGAATGGTCACTCTTTTTGGGCAGCAGgtaaagattt ... ctcatttcagGTGTATACAGCAAGAGACGAGAGCTTTGTGTCGTGTAATGAGCAGGTGAAT
EST: AAAGTTCTAAGAAAAATCAAATTAGAATGGTCACTCTTTTTGGGCAGCAG GTGTATACAGCAAGAGACGAGAGCTTTGTGTCGTGTAATGAGCAGGTGAATEST: gi|116451566|gb|EG494158.1|EG494158
genomic: AAAGTTCTAAGAAAAATCAAATTAGAATGGTCACTCTTTTTGGGCAGCAGgtaaagattt ... ctcatttcagGTGTATACAGCAAGAGACGAGAGCTTTGTGTCGTGTAATGAGCAGGTGAAT
EST: AAAGTTCTAAGAAAAATCAAATTAGAATGGTCACTCTTTTTGGGCAGCAG GTGTATACAGCAAGAGACGAGAGCTTTGTGTCGTGTAATGAGCAGGTGAAT
genomic: AAAGTTCTAAGAAAAATCAAATTAGAATGGTCACTCTTTTTGGGCAGCAGgtaaagattt ... ctcatttcagGTGTATACAGCAAGAGACGAGAGCTTTGTGTCGTGTAATGAGCAGGTGAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTGTCCAAGGACGAAATTTTGTGCAAGAAACGTTTTGAATCGTATGAAGAAAGTTCTAAGAAAAATCAAATTAGAATGGTCACTCTTTTTGGGCAGCAGgtaaagatttttaacgttatgtcgctagtatactattttaaatctttttgttctcattgttgcctttgttcttaattaaaatagcaaaaatacatgttcatcaactctcatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA