1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TACCGAAGCAGAACTAAATGCAGTTAGGAAATTTTCAATGGATGCCGGTGCTTTTGATGCTGTGGTCTGCTCCCACCATGCTCATAGTGGTAAAGGAGCGgtaatcttctctattcgagaccaacactatgtgattatatgcaattttgtttgcaatctcatcttattgatagatgaattgttcttgtaaatgttatag
species | Arabidopsis thaliana |
transcript | AT1G50480.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTTTTGATGCTGTGGTCTGCTCCCACCATGCTCATAGTGGTAAAGGAGCG GTGGATCTTGGTATCGCGGTTGAAAA-GCTTGTCAAAACATTACACAGCCEST: gi|125305928|gb|EL320013.1|EL320013
genomic: CTTTTGATGCTGTGGTCTGCTCCCACCATGCTCATAGTGGTAAAGGAGCGgtaatcttct ... aatgttatagGTGGATCTTGGTATCGCGGTTGAAAAAGCTTGTCAAAACATTACACAGCC
EST: TTTTGTATGCTGTGGTCTGCTCCCACCATGCTCATAGTGGTAAAGGAGCG GTGGATCTTGGTATCGCGGTTGAAAAAGEST: gi|125308556|gb|EL322641.1|EL322641
genomic: TTTTG-ATGCTGTGGTCTGCTCCCACCATGCTCATAGTGGTAAAGGAGCGgtaatcttct ... aatgttatagGTGGATCTTGGTATCGCGGTTGAAAAAG
EST: CTTTTGATGCTGTGGTCTGCTCCCACCATGCTCATAGTGGTAAAGGAGCG GTGGATCTTGGTATCGCGGTTGAAAAAG
genomic: CTTTTGATGCTGTGGTCTGCTCCCACCATGCTCATAGTGGTAAAGGAGCGgtaatcttct ... aatgttatagGTGGATCTTGGTATCGCGGTTGAAAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACCGAAGCAGAACTAAATGCAGTTAGGAAATTTTCAATGGATGCCGGTGCTTTTGATGCTGTGGTCTGCTCCCACCATGCTCATAGTGGTAAAGGAGCGgtaatcttctctattcgagaccaacactatgtgattatatgcaattttgtttgcaatctcatcttattgatagatgaattgttcttgtaaatgttatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG