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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGCGTTGATATTGGGTCATCAACTGTTGCAAGAGGAGTTGTGAGTCTTGTTCTTGGTTACCTCAACAAACTCGTGATTGAAATGGCCTTCTTAATACAGgtaaactaattaccaatctttcctggtttaaatctaagtcaacttcggtgggtattctggttacatattgaagcattggatttgagtgagcaatttcttctttgtgcag

Basic information

species Arabidopsis thaliana
transcript AT2G28320.1
intron # 20
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G28320.1 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: LOC_Os10g33930.1 (Oryza sativa), 5'ss of exon 9
GGGCGTTGATATTGGGTCATCAACTGTTGCAAGAGGAGTTGTGAGTCTTGTTCTTGGTTACCTCAACAAACTCGTGATTGAAATGGCCTTCTTAATACAGgtaaactaattaccaatctttcctggtttaaatctaagtcaacttcggtgggtattctggttacatattgaagcattggatttgagtgagcaatttcttctttgtgcag
|| |||||||| || || ||||| |||||| | || || ||||| ||||| ||||| ||| | ||||| || |||||||||||||||||| | ||||||||| | | | |||| | || || | | | | | | || | || | || | ||| | || | | ||| ||| ||
TGGAGTTGATATAGGCTCGTCAACAGTTGCACGGGGTGTGGTGAGCCTTGTGCTTGGCTACTTGAACAACCTGGTGATTGAAATGGCCTTCCTGGTACAGgtaa--ttgtggcatatctaatcaagt--aattacacaacgagcttgatgtttcttttactt-----ctcaagattcagaacagtgctgtttcttttttcctttaatga

upper sequence: AT2G28320.1 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: GRMZM2G069976_T01 (Zea mays), 5'ss of exon 21
GGGCGTTGATATTGGGTCATCAACTGTTGCAAGAGGAGTTGTGAGTCTTGTTCTTGGTTACCTCAACAAACTCGTGATTGAAATGGCCTTCTTAATACAGgtaaactaattaccaatctttcctggtttaaatctaagtcaacttcggtgggtattctggttacatattgaagcattggatttgagtgagcaatttcttctttgtgcag
|| ||||||||||| |||||||| || ||| |||| || ||||| || || ||||| ||| | ||||| || ||||| |||||||||||||| |||||||| | ||| |||| | | || | | || | | | | | | | | | | ||||| |||| | | || || || |
TGGAGTTGATATTGGTTCATCAACGGTGGCACGAGGTGTGGTGAGCCTAGTGCTTGGCTACTTGAACAATCTTGTGATCGAAATGGCCTTCTTGGTACAGgtat-ccaatcgtgtatctagc-taattcaca---aaacccctgttcatatgaaatttcctca-agattga-gcatacatctgtaaagatcacagaagatttaagac--

upper sequence: AT2G28320.1 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: GLYMA12G29750.1 (Glycine max), 5'ss of exon 20
GGGCGTTGATATTGGGTCATCAACTGTTGCAAGAGGAGTTGTGAGTCTTGTTCTTGGTTACCTCAACAAACTCGTGATTGAAATGGCCTTCTTAATACAGgtaaactaat--taccaatctttcctggtttaaatcta-agtcaacttcggtgggtattctggttacatattga--------------agcattggatttgagtga-gcaatttcttctttgtgcag-------------------------------------------------------------
|| ||||||||||| |||||||||||||||||||| |||||||||||||| ||||| ||||||||| | || || || || ||||| || |||||||||||||| | || | | || | |||| ||| | ||| | | | ||| | || | || | ||| | | || |||| | | ||
TGGAGTTGATATTGGATCATCAACTGTTGCAAGAGGTGTTGTGAGTCTTGTCCTTGGGTACCTCAACCATCTGGTTATAGAGATGGCATTTTTAATACAGgtaaagtgatcttgttctttttctttcgttttaattagtaatcaggctaaaaaattggtgaaattatacatcaattatcttgtggaagagtctccgataatggcaatgccatttaccttccgaacaaatttgttattcttctatactagtgattctaaattttaatttctgtacatcattttgttcag

upper sequence: AT2G28320.1 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: GLYMA13G40010.1 (Glycine max), 5'ss of exon 20
GGGCGTTGATATTGGGTCATCAACTGTTGCAAGAGGAGTTGTGAGTCTTGTTCTTGGTTACCTCAACAAACTCGTGATTGAAATGGCCTTCTTAATACAGgtaaactaat-----taccaatctttcc--tggtttaaatctaagtcaacttcggtgggtattc-tggttacatat-tgaagcattggatttgagtgagcaatttcttctttgtgcag
|| ||||||||||| ||||||||||| |||||||| |||||||||||||| ||||| ||||||||| | || || || || ||||| || |||||||||||||| | || | ||||||| | | ||| | | | |||| | | ||| | || ||| || | || | | | ||||| |||
TGGAGTTGATATTGGATCATCAACTGTCGCAAGAGGTGTTGTGAGTCTTGTCCTTGGGTACCTCAACCATCTGGTTATAGAGATGGCATTTTTAATACAGgtaaagtgatcttgttctttttctttccgataatggcaatgccatttaccttctgaacgaatttgtttttctatacatgtgattataaatcttaatttttgtacatcattttgttcag

upper sequence: AT2G28320.1 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: Vv06s0004g02720.t01 (Vitis vinifera), 5'ss of exon 20
GGGCGTTGATATTGGGTCATCAACTGTTGCAAGAGGAGTTGTGAGTCTTGTTCTTGGTTACCTCAACAAACTCGTGATTGAAATGGCCTTCTTAATACAGgtaaactaattaccaatctttcctggtttaaatctaagtcaacttcggtgggtattctggttacatattgaagcattggatttga-gtgagcaatttcttctttgtgcag
|| | || |||||||||||||| |||||||| || || || ||||||||||| |||||||| ||||| || || ||||||||| | || | |||||||||| || || |||| | | || || |||| | | | |||| || ||| | ||| | ||| | | ||
TGGAATCGACATTGGGTCATCAACAGTTGCAAGGGGCGTGGTCAGTCTTGTTCTCGGTTACCTTAACAATCTGGTTATTGAAATGACATTTCTGATACAGgtaacacaactat--gtcttccacatgtggcat----gtgttcttcaaattatctcttagttatatgcctcagcgccagttttatcgagagtagaagcaatttgaa----