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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGCGTTGATATTGGGTCATCAACTGTTGCAAGAGGAGTTGTGAGTCTTGTTCTTGGTTACCTCAACAAACTCGTGATTGAAATGGCCTTCTTAATACAGgtaaactaattaccaatctttcctggtttaaatctaagtcaacttcggtgggtattctggttacatattgaagcattggatttgagtgagcaatttcttctttgtgcag

Basic information

species Arabidopsis thaliana
transcript AT2G28320.1
intron # 20
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G28320.1 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: LOC_Os10g33930.1 (Oryza sativa), 5'ss of exon 9
GGGCGTTGATATTGGGTCATCAACTGTTGCAAGAGGAGTTGTGAGTCTTGTTCTTGGTTACCTCAACAAACTCGTGATTGAAATGGCCTTCTTAATACAGgtaaactaattaccaatctttcctggtttaaatctaagtcaacttcggtgggtattctggttacatattgaagcattggatttgagtgagcaatttcttctttgtgcag
 || |||||||| || || ||||| |||||| | || || ||||| ||||| ||||| ||| | ||||| || |||||||||||||||||| |  |||||||||  |  |  |  ||||   |  ||  || |  |   | |  | | ||  | || |  ||      | |||  |  ||   | |       ||| ||| ||      
TGGAGTTGATATAGGCTCGTCAACAGTTGCACGGGGTGTGGTGAGCCTTGTGCTTGGCTACTTGAACAACCTGGTGATTGAAATGGCCTTCCTGGTACAGgtaa--ttgtggcatatctaatcaagt--aattacacaacgagcttgatgtttcttttactt-----ctcaagattcagaacagtgctgtttcttttttcctttaatga

upper sequence: AT2G28320.1 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: GRMZM2G069976_T01 (Zea mays), 5'ss of exon 21
GGGCGTTGATATTGGGTCATCAACTGTTGCAAGAGGAGTTGTGAGTCTTGTTCTTGGTTACCTCAACAAACTCGTGATTGAAATGGCCTTCTTAATACAGgtaaactaattaccaatctttcctggtttaaatctaagtcaacttcggtgggtattctggttacatattgaagcattggatttgagtgagcaatttcttctttgtgcag
 || ||||||||||| |||||||| || ||| |||| || ||||| || || ||||| ||| | ||||| || ||||| ||||||||||||||  ||||||||  | |||     ||||  | |  || | |   ||  |    |   |  | | | |  | | | ||||| ||||     |  |  || ||        ||    |  
TGGAGTTGATATTGGTTCATCAACGGTGGCACGAGGTGTGGTGAGCCTAGTGCTTGGCTACTTGAACAATCTTGTGATCGAAATGGCCTTCTTGGTACAGgtat-ccaatcgtgtatctagc-taattcaca---aaacccctgttcatatgaaatttcctca-agattga-gcatacatctgtaaagatcacagaagatttaagac--

upper sequence: AT2G28320.1 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: GLYMA12G29750.1 (Glycine max), 5'ss of exon 20
GGGCGTTGATATTGGGTCATCAACTGTTGCAAGAGGAGTTGTGAGTCTTGTTCTTGGTTACCTCAACAAACTCGTGATTGAAATGGCCTTCTTAATACAGgtaaactaat--taccaatctttcctggtttaaatcta-agtcaacttcggtgggtattctggttacatattga--------------agcattggatttgagtga-gcaatttcttctttgtgcag-------------------------------------------------------------
 || ||||||||||| |||||||||||||||||||| |||||||||||||| ||||| ||||||||| | || || || || ||||| || |||||||||||||| | ||  |     | ||   | |||| |||    | |||   |       |  |    ||| | ||  |              ||  |  |||    |  | || ||||    |  |  ||                                                              
TGGAGTTGATATTGGATCATCAACTGTTGCAAGAGGTGTTGTGAGTCTTGTCCTTGGGTACCTCAACCATCTGGTTATAGAGATGGCATTTTTAATACAGgtaaagtgatcttgttctttttctttcgttttaattagtaatcaggctaaaaaattggtgaaattatacatcaattatcttgtggaagagtctccgataatggcaatgccatttaccttccgaacaaatttgttattcttctatactagtgattctaaattttaatttctgtacatcattttgttcag

upper sequence: AT2G28320.1 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: GLYMA13G40010.1 (Glycine max), 5'ss of exon 20
GGGCGTTGATATTGGGTCATCAACTGTTGCAAGAGGAGTTGTGAGTCTTGTTCTTGGTTACCTCAACAAACTCGTGATTGAAATGGCCTTCTTAATACAGgtaaactaat-----taccaatctttcc--tggtttaaatctaagtcaacttcggtgggtattc-tggttacatat-tgaagcattggatttgagtgagcaatttcttctttgtgcag
 || ||||||||||| ||||||||||| |||||||| |||||||||||||| ||||| ||||||||| | || || || || ||||| || |||||||||||||| | ||     |     |||||||  |  |   |||   | | | |||| |   | |||  |  ||  |||  ||      |  || | | |             ||||| |||
TGGAGTTGATATTGGATCATCAACTGTCGCAAGAGGTGTTGTGAGTCTTGTCCTTGGGTACCTCAACCATCTGGTTATAGAGATGGCATTTTTAATACAGgtaaagtgatcttgttctttttctttccgataatggcaatgccatttaccttctgaacgaatttgtttttctatacatgtgattataaatcttaatttttgtacatcattttgttcag

upper sequence: AT2G28320.1 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: Vv06s0004g02720.t01 (Vitis vinifera), 5'ss of exon 20
GGGCGTTGATATTGGGTCATCAACTGTTGCAAGAGGAGTTGTGAGTCTTGTTCTTGGTTACCTCAACAAACTCGTGATTGAAATGGCCTTCTTAATACAGgtaaactaattaccaatctttcctggtttaaatctaagtcaacttcggtgggtattctggttacatattgaagcattggatttga-gtgagcaatttcttctttgtgcag
 ||  | || |||||||||||||| |||||||| || || || ||||||||||| |||||||| ||||| || || ||||||||| | ||  | ||||||||||   || ||    |||| |     |   ||    ||   ||||      | |  | |||| ||     |||    | |||   | ||| |    |   ||       
TGGAATCGACATTGGGTCATCAACAGTTGCAAGGGGCGTGGTCAGTCTTGTTCTCGGTTACCTTAACAATCTGGTTATTGAAATGACATTTCTGATACAGgtaacacaactat--gtcttccacatgtggcat----gtgttcttcaaattatctcttagttatatgcctcagcgccagttttatcgagagtagaagcaatttgaa----