1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGGGTTTGCAGATGCAAAAGTTGGTGTTAACAAACCAGAATTGCTTCCTAAAGAGTTCACTTCTGTTATAGATGTTGCTGATTTCCTCTCTAATGGTCAGgtatgcatgcttgtaccatccatctatttttgaggtttgattaaagcacttgtttcttgttaatgtcatgtggatctatttgcttattctgtagatttttagtgtatttctgattttgaatgttttcgccgcttttggttttcttttcttaatgatgttgttctttgagagttatag
species | Arabidopsis thaliana |
transcript | AT5G52970.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTCACTTCTGTTATAGATGTTGCTGATTTCCTCTCTAATGGTCAG GAGAAGAGAATTGCTCAAGAAAATCGCTAATCTTGAGAAAGATACAGGATTEST: gi|125136807|gb|EL176837.1|EL176837
genomic: TTCACTTCTGTTATAGATGTTGCTGATTTCCTCTCTAATGGTCAGgtatgcatgc ... agagttatagGAGAAGAGAATTGCTCAAGAAA-TCGCTAATCTTGAGAAAGATACAGGATT
EST: AAGAGTTCACTTCTGTTATAGATGTTGCTGATTTCCTCTCTAATGGTCAG GAGAAGAGAATTGCTCAAGAAATCGCTAATCTTG
genomic: AAGAGTTCACTTCTGTTATAGATGTTGCTGATTTCCTCTCTAATGGTCAGgtatgcatgc ... agagttatagGAGAAGAGAATTGCTCAAGAAATCGCTAATCTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGGTTTGCAGATGCAAAAGTTGGTGTTAACAAACCAGAATTGCTTCCTAAAGAGTTCACTTCTGTTATAGATGTTGCTGATTTCCTCTCTAATGGTCAGgtatgcatgcttgtaccatccatctatttttgaggtttgattaaagcacttgtttcttgttaatgtcatgtggatctatttgcttattctgtagatttttagtgtatttctgattttgaatgttttcgccgcttttggttttcttttcttaatgatgttgttctttgagagttatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT