1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAAGgtaccattttgatttgagcttatgaatctagttgtcttctacgttaatgggtttatgcatgatgattgattggttgattcaagagaattgtacttagaaatggttggaattggttctttttgtgtgcag
species | Arabidopsis thaliana |
transcript | AT5G41520.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATCATATCAGAGACTAACCGCCGTGAGATCTACCAAGTACCTCTTCAAAG AGGGTGTTTTGTTTGCTAAEST: gi|164219842|gb|EL985539.1|EL985539
genomic: ATCATATCAGAGACTAACCGCCGTGAGATCT-CCAAGTACCTCTTCAAAGgtaccatttt ... ttgtgtgcagAGGGTGTTTTGTTTGCTAA
EST: ATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAAG AGGGTGTTTTGTTTGCTAAAAAGGATTTCAAEST: gi|163970478|gb|EL989863.1|EL989863
genomic: ATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAAGgtaccatttt ... ttgtgtgcagAGGGTGTTTTGTTTGCTAAAAAGGATTTCAA
EST: GTACCTCTTCAAAG AGGGTGTTTTGTTTGCTAAAAAAGGATTTCAACTTACCACAACATCCTTTGEST: gi|116471696|gb|EG514288.1|EG514288
genomic: GTACCTCTTCAAAGgtaccatttt ... ttgtgtgcagAGGGTGTTTTGTTTGCT-AAAAAGGATTTCAACTTACCACAACATCCTTTG
EST: ATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAAG AGGGTGTTTTGTTTGCTAAAAAGGATTTCAACTTACCACAACATCCTTTGAEST: gi|116471744|gb|EG514336.1|EG514336
genomic: ATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAAGgtaccatttt ... ttgtgtgcagAGGGTGTTTTGTTTGCTAAAAAGGATTTCAACTTACCACAACATCCTTTGA
EST: ATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAAG AGGGTGTTTTGTTTGCTAAAAAGGATTTCAACTTACCACAACATCCTTTGAEST: gi|124864864|gb|EH949301.1|EH949301
genomic: ATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAAGgtaccatttt ... ttgtgtgcagAGGGTGTTTTGTTTGCTAAAAAGGATTTCAACTTACCACAACATCCTTTGA
EST: ATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAAG AGGGTAAGTTTTGTTTGCTAAAAAGGATTTCAACTTACCACAACAEST: gi|164152199|gb|EL994072.1|EL994072
genomic: ATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAAGgtaccatttt ... ttgtgtgcagAGGGT--GTTTTGTTTGCTAAAAAGGATTTCAACTTACCACAACA
EST: TCTCCAAGTACCTCTTCAAAG AGGGTGTTTTGTTTGCTAAAAAAGGATTTCAACTTACCACAACATCCTTTGEST: gi|125023008|gb|EL095277.1|EL095277
genomic: TCTCCAAGTACCTCTTCAAAGgtaccatttt ... ttgtgtgcagAGGGTGTTTTGTTTGCT-AAAAAGGATTTCAACTTACCACAACATCCTTTG
EST: AGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAAG AGGGTGTTTTGTTTGCTAAAAAGGATTTCAACTTACCACAACATCCTTTGAEST: gi|116406681|gb|EG449273.1|EG449273
genomic: AGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAAGgtaccatttt ... ttgtgtgcagAGGGTGTTTTGTTTGCTAAAAAGGATTTCAACTTACCACAACATCCTTTGA
EST: ATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAAG AGGGTGTTTTGTTTGCTAAAAAGGATTTCAACTTACCACAACATCCTTTGAEST: gi|116406665|gb|EG449257.1|EG449257
genomic: ATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAAGgtaccatttt ... ttgtgtgcagAGGGTGTTTTGTTTGCTAAAAAGGATTTCAACTTACCACAACATCCTTTGA
EST: ATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAAG AGGGTGTTTTGTTTGCTAAAAAGGATTTCAACTTACCACAACATCCTTTGAEST: gi|116471706|gb|EG514298.1|EG514298
genomic: ATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAAGgtaccatttt ... ttgtgtgcagAGGGTGTTTTGTTTGCTAAAAAGGATTTCAACTTACCACAACATCCTTTGA
EST: ATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAAG AGGGTGTTTTGTTTGCTAAAAAGGATTTCAACTTACCACAACATCCTTTGAEST: gi|163976375|gb|EL979175.1|EL979175
genomic: ATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAAGgtaccatttt ... ttgtgtgcagAGGGTGTTTTGTTTGCTAAAAAGGATTTCAACTTACCACAACATCCTTTGA
EST: ATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAAG AGGGTGTTTTGTTTGCTAAAAAGGATTTCAACTTACCACAACAEST: gi|164122362|gb|ES097121.1|ES097121
genomic: ATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAAGgtaccatttt ... ttgtgtgcagAGGGTGTTTTGTTTGCTAAAAAGGATTTCAACTTACCACAACA
EST: ATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAAG AGGGTGTTTTGTTTGCTAAAAAGGATTTCAACTTACCAEST: gi|164199833|gb|ES002100.1|ES002100
genomic: ATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAAGgtaccatttt ... ttgtgtgcagAGGGTGTTTTGTTTGCTAAAAAGGATTTCAACTTACCA
EST: ATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAAG AGGGTGTTTTGTTTGCEST: gi|47827937|gb|CK117621.1|CK117621
genomic: ATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAAGgtaccatttt ... ttgtgtgcagAGGGTGTTTTGTTTGC
EST: CCGCCGTGAGATCTCCAAGTACCTCTTCAAAG AGGGTGTTTTGTTTGCTAAAAAGGATTTCAACTTACCACAACATCCTTTGAEST: gi|164107587|gb|ES170828.1|ES170828
genomic: CCGCCGTGAGATCTCCAAGTACCTCTTCAAAGgtaccatttt ... ttgtgtgcagAGGGTGTTTTGTTTGCTAAAAAGGATTTCAACTTACCACAACATCCTTTGA
EST: TATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAAG AGGGTGTTTTGTTTGCTAAAAAGGATTTCAACTTACCACAACATCCTTTGAEST: gi|164201321|gb|ES050450.1|ES050450
genomic: TATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAAGgtaccatttt ... ttgtgtgcagAGGGTGTTTTGTTTGCTAAAAAGGATTTCAACTTACCACAACATCCTTTGA
EST: AGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAAG AGGGTGTTTTGTTTGCTAAAAAGGATTTCAACTTACCACAACATCCEST: gi|124926737|gb|EL004535.1|EL004535
genomic: AGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAAGgtaccatttt ... ttgtgtgcagAGGGTGTTTTGTTTGCTAAAAAGGATTTCAACTTACCACAACATCC
EST: ATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAAG AGGGTGTTTTGTTTGCTAAAAAGGATTTCAACTTATCACAACEST: gi|164022090|gb|ES194591.1|ES194591
genomic: ATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAAGgtaccatttt ... ttgtgtgcagAGGGTGTTTTGTTTGCTAAAAAGGATTTCAACTTACCACAAC
EST: ATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAAG AGGGTAGTTTTGTTTGCTAAAAAGGATTTCAACTTACCACAACATEST: gi|124804253|gb|EH892168.1|EH892168
genomic: ATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAAGgtaccatttt ... ttgtgtgcagAGGGT-GTTTTGTTTGCTAAAAAGGATTTCAACTTACCACAACAT
EST: ATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAGG AGGGTGTTTTGTTTGCTAAAAAGGATTTCAAEST: gi|125013900|gb|EL086169.1|EL086169
genomic: ATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAAGgtaccatttt ... ttgtgtgcagAGGGTGTTTTGTTTGCTAAAAAGGATTTCAA
EST: GATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAAG AGGGTGTTTTGTTTGCTAAAAAGGATTTCAACTTACCACAACATCCTTTGAEST: gi|116471734|gb|EG514326.1|EG514326
genomic: GATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAAGgtaccatttt ... ttgtgtgcagAGGGTGTTTTGTTTGCTAAAAAGGATTTCAACTTACCACAACATCCTTTGA
EST: ATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAAG AGGGTGTTTTGTTTGCTAAAAAGGATTTCAACTTACCACAACATCCTTTGAEST: gi|47831362|gb|CK121046.1|CK121046
genomic: ATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAAGgtaccatttt ... ttgtgtgcagAGGGTGTTTTGTTTGCTAAAAAGGATTTCAACTTACCACAACATCCTTTGA
EST: ATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAAG AGGGTGTTTTGTTTGCTAAAAAGGATTTCAACTTACCACAACATCCTTTGAEST: gi|124953707|gb|EL028864.1|EL028864
genomic: ATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAAGgtaccatttt ... ttgtgtgcagAGGGTGTTTTGTTTGCTAAAAAGGATTTCAACTTACCACAACATCCTTTGA
EST: TATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAAG AGGGTGTTTTGTTTGCTAAAAAGGATTTCAACTTACCACAACATCCTTTGAEST: gi|164215746|gb|ES118737.1|ES118737
genomic: TATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAAGgtaccatttt ... ttgtgtgcagAGGGTGTTTTGTTTGCTAAAAAGGATTTCAACTTACCACAACATCCTTTGA
EST: CCGCCGTTGAGATCTCCAAGTTACCTCTTCAAAG AGGGTGTTTTGTTTGCTAAAAAGGATTTCAACTTACCACAACATCCTTTGAEST: gi|116476370|gb|EG518962.1|EG518962
genomic: CCGCCG-TGAGATCTCCAAG-TACCTCTTCAAAGgtaccatttt ... ttgtgtgcagAGGGTGTTTTGTTTGCTAAAAAGGATTTCAACTTACCACAACATCCTTTGA
EST: ATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAAG AGGGTGTTTTGTTTGCTAAAAAGGATTTCAACTTACCACAACATCCTTTGA
genomic: ATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAAGgtaccatttt ... ttgtgtgcagAGGGTGTTTTGTTTGCTAAAAAGGATTTCAACTTACCACAACATCCTTTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAAGgtaccattttgatttgagcttatgaatctagttgtcttctacgttaatgggtttatgcatgatgattgattggttgattcaagagaattgtacttagaaatggttggaattggttctttttgtgtgcag
- - - - - - - - - - - - GAGATC