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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGGATACCGCTATCTCGACGTGAGGACACCAGACGAATTCAGCATCGGACATCCGACTAGAGCCATCAACGTACCTTACATGTACAGAGTCGGATCAGgttttcatcaccgaccttaaggttcctcttatgagaaagagtgaaaatgaaaaacaacttaaaactaacaccaagccaaaaccgttgcag

Basic information

species Arabidopsis thaliana
transcript AT4G35770.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124861874|gb|EH946311.1|EH946311
EST:     ACATCCGACTAGAGCCATCAACGTACCTTACATGTACAGAGTCGGATCAG                         GAATGGTTAAGAACCCGAGTTTTCTAAGACAGG
genomic: ACATCCGACTAGAGCCATCAACGTACCTTACATGTACAGAGTCGGATCAGgttttcatca ... accgttgcagGAATGGTTAAGAACCCGAGTTTTCTAAGACAGG
EST: gi|125294685|gb|EL308770.1|EL308770
EST:     ACATCCGACTAGAGCCATCAACGTACCTTACATGTACAGTGTCGGATCAG                         GAATGGTTAAG
genomic: ACATCCGACTAGAGCCATCAACGTACCTTACATGTACAGAGTCGGATCAGgttttcatca ... accgttgcagGAATGGTTAAG
EST: gi|125198567|gb|EL213521.1|EL213521
EST:     ACATCCGACTAGAGCCATCAACGTACCTTACATGTACAGAGTCGGATCAG                         GAATGGTTAAGAACC
genomic: ACATCCGACTAGAGCCATCAACGTACCTTACATGTACAGAGTCGGATCAGgttttcatca ... accgttgcagGAATGGTTAAGAACC
EST: gi|124704541|gb|EH795943.1|EH795943
EST:     CCATCAACGTACCTTACATGTACAGAGTCGGATCAG                         GAATGGTTAAGAACCCGTAGTTTTCTAAGACAGGTCTCGTCCCACTTCAGG
genomic: CCATCAACGTACCTTACATGTACAGAGTCGGATCAGgttttcatca ... accgttgcagGAATGGTTAAGAACCCG-AGTTTTCTAAGACAGGTCTCGTCCCACTTCAGG