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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCATCAGACAAACTTGGCAAAGAGAGCTGCTCGAGAGGCTAAGGATGCTCCTACTAAGCCGCAGCCACTCAAGCGCAATGTCTCAGTTCGCAGAACAGgtaataagttgttttattttctataattataatacagctttattcccattgttgatatcaaatctgcctaggcctggaattggatataatgggaaagtga...

Basic information

species Arabidopsis thaliana
transcript AT2G32600.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G32600.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv08s0007g04710.t01 (Vitis vinifera), 5'ss of exon 2
AGGCATCAGACAAACTTGGCAAAGAGAGCTGCTCGAGAGGCTAAGGATGCTCCTACTAAGCCGCAGCCACTCAAGCGCAATGTCTCAGTTCGCAGAACAGgtaataagttgttttattttctataattataatacagctttattcccattgttgatatcaaatctgcctaggcctggaattggatataatgggaaagtga-------
||||||||||| || ||||| |||||||||||||| ||||| || || || ||| |  |||| ||||| | ||||||||| ||||| || ||||  ||||||||    ||| |    || || |  | | ||  | |   ||||   | ||||| | |       | | |   ||  |||||    | ||| || |           
AGGCATCAGACGAATTTGGCCAAGAGAGCTGCTCGTGAGGCCAAAGAGGCGCCTGCGCAGCCACAGCCCCACAAGCGCAAAGTCTCCGTACGCAAGACAGgtaaggttttgatacgctt-ctctgttcagaactctgg--tattgataatgttg-tgttgtg---gtccaattctttaattgtgagttatgtgatatactttttgtt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47831635|gb|CK121319.1|CK121319
EST:     TCCTACTAAGCCGCAGCCACTCAAGCGCAATGTCTCAGTTCGCAGAACAG                         TTAAAATTGGTAGACCAGGGTACCGGGTTACAAAACAGTATGATCCCGAGC
genomic: TCCTACTAAGCCGCAGCCACTCAAGCGCAATGTCTCAGTTCGCAGAACAGgtaataagtt ... ggtcttgcagTTAAAATTGGTAGACCAGGGTACCGGGTTACAAAACAGTATGATCCCGAGC