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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCGTGTTTTGTATCAACATTGTCTTGGGAAATGTCAGTCTTCGTTACATTCCGGTTTCGTTTATGCAGACGATTAAGTCTTTCACTCCAGCTACTACAGgttagggttttcagatggaaagtttcctatttgtgatatttctattgtctattgtctaattgtttcttatgtatatgtttgagcag

Basic information

species Arabidopsis thaliana
transcript AT1G77610.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G77610.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA04G42900.1 (Glycine max), 5'ss of exon 2
TTCGTGTTTTGTATCAACATTGTCTTGGGAAATGTCAGTCTTCGTTACATTCCGGTTTCGTTTATGCAGACGATTAAGTCTTTCACTCCAGCTACTACAGgttagggttttcagatggaaagtttcctatttgtgatatttctattgtctattgtctaattgtttcttatgtatatgtttgagcag-------------------
|| ||||| ||||| ||||||||  |||| ||||| || || || |||||||| ||||| ||||||||||| || ||||| ||||| || || || ||||||   |||||    || |    |  | | | ||  |||| | |  |  ||  | | || |||   |||| | |||| |                           
TTTGTGTTCTGTATTAACATTGTTCTGGGGAATGTGAGCCTACGATACATTCCAGTTTCTTTTATGCAGACAATAAAGTCATTCACACCTGCCACCACAGgt--aggtttaataatcggtgttaacatttctgccatatatttgctacctgctttata-ttgagacttaaggatatttacatctgattttggtgaactggcacag

upper sequence: AT1G77610.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv18s0001g02970.t01 (Vitis vinifera), 5'ss of exon 2
TTCGTGTTTTGTATCAACATTGTCTTGGGAAATGTCAGTCTTCGTTACATTCCGGTTTCGTTTATGCAGACGATTAAGTCTTTCACTCCAGCTACTACAGgttagggtt------------ttcagatggaaagtttcctatttgtgatatttc-tattgtctat-----tgtctaat---tgtttcttatgtatatgt---ttgagcag
|| || || ||||| ||||| || ||||| || || ||| | ||||||||||| ||||| ||||||||||| || ||||| |||||||| || || |||||| ||| ||            |  | |   |   || | | ||  | |  | |  |||| | |||     ||| | ||   ||||||| ||  | || |   || | |||
TTTGTATTCTGTATTAACATAGTGTTGGGGAACGTGAGTTTGCGTTACATTCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAGgtcaggtttagaatgtgttgttataaacacatcattgctttttcatcagctctgatattatttatattactgtatgatacttgtttctgattcagatatgttttaaacag