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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCTAAAGCATCTCCAGGAAACATTCAAGGTTGTGATCTTCACGAAGGCGACTGGGGTCAAGTCGGCTCTATCGTCTTCTGGAACTACGTTCATGGCAAgtcaatgttatatacatcttgttcatgtataaccatgtctcaaagttaaacatataatatcaattgttaaataattggtgcagatagag

Basic information

species Arabidopsis thaliana
transcript AT1G70830.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86063938|gb|DR359695.1|DR359695
EST:     TTCTGGAACTACGTTCATGATAGAG                         AGGCAAAGGTGGCTAAGGAGAGGATTGAGGCAGTGGAGCCGAATAAGAAC
genomic: TTCTGGAACTACGTTCATGGCA-A-gtcaatgtta ... gcagatagagAGGCAAAGGTGGCTAAGGAGAGGATTGAGGCAGTGGAGCCGAATAAGAAC
EST: gi|86063938|gb|DR359695.1|DR359695
EST:     TTCTGGAACTACGTTCATGATAGAG                         AGGCAAAGGTGGCTAAGGAGAGGATTGAGGCAGTGGAGCCGAATAAGAAC
genomic: TTCTGGAACTACGTTCATGGCA-A-gtcaatgtta ... gcagatagagAGGCAAAGGTGGCTAAGGAGAGGATTGAGGCAGTGGAGCCGAATAAGAAC
EST: gi|86080369|gb|DR376126.1|DR376126
EST:     ACTACGTTCATGATAGAG                         AGGCAAAGSTGGCTAAGGAGAGGATTGAGGCAGTGGAGCCGAATAAGAAC
genomic: ACTACGTTCATGGCA-A-gtcaatgtta ... gcagatagagAGGCAAAGGTGGCTAAGGAGAGGATTGAGGCAGTGGAGCCGAATAAGAAC
EST: gi|86080369|gb|DR376126.1|DR376126
EST:     ACTACGTTCATGATAGAG                         AGGCAAAGSTGGCTAAGGAGAGGATTGAGGCAGTGGAGCCGAATAAGAAC
genomic: ACTACGTTCATGGCA-A-gtcaatgtta ... gcagatagagAGGCAAAGGTGGCTAAGGAGAGGATTGAGGCAGTGGAGCCGAATAAGAAC
EST: gi|47831001|gb|CK120685.1|CK120685
EST:     CTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATG
genomic: CTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATG
EST: gi|47831001|gb|CK120685.1|CK120685
EST:     CTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATG
genomic: CTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATG
EST: gi|47831919|gb|CK121603.1|CK121603
EST:     CTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATG
genomic: CTGGGGCACAGTCGGCTCTATCGTCTTCTGGAATTACGTACATG